Bradyrhizobium sp. BF49: BF49_6221
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Entry
BF49_6221 CDS
T04337
Name
(GenBank) DNAdirected RNA polymerase beta subunit EC 2776
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brad
Bradyrhizobium sp. BF49
Pathway
brad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF49_6221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brad03021
]
BF49_6221
03400 DNA repair and recombination proteins [BR:
brad03400
]
BF49_6221
Enzymes [BR:
brad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF49_6221
Transcription machinery [BR:
brad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF49_6221
DNA repair and recombination proteins [BR:
brad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF49_6221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
CUT15141
LinkDB
All DBs
Position
I:6377460..6381641
Genome browser
AA seq
1393 aa
AA seq
DB search
MNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGP
IKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRI
GLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTAMIGAE
AIRELLKGMDLEKLELTLRAEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMIMTVVP
VIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQEAV
DALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRL
HQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIREHPVLL
NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVL
MMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGEMAELEHALHAKVIH
LHTKIKYRWEGIDDTGKISKRWIETTAGRVMLGNLLPKNPRVPYEIINKLMTKREISGVI
DQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDTTRTLAKDFE
QQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYMMAHSG
ARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLADTALK
TANSGYLTRRLVDVAQDCIITQDDCGTKLGIKMRAIVDAGTVVASLGSRILGRTACEDVR
DSTGKVIFKRGTLMEESHLDAIHQGGVQEVKIRSALTCELVNGICGKCYGRDLARGTPVN
HGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAIARNSEG
HLVAMVRNMVIAIVDADGTERATHRIQYGSRLHVDEGDMVKRGQRIVEWDPYTRPLLTEV
EGTIGFEDLVEGQSISETLDEATGIAKRVVIDWRSMRGGGDLRPAIVIKGKDGKVLKLAR
GGDARYMLSVDGILSVDVGAKVQAGDILARVSTESAKTRDITGGLPRVAELFEARRPKDA
AIIAEIAGTIRFGRDYKNKRRISIEPMDKTDEAREYLIPKGKHIHLQDGDVVEKGDFIVE
GNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVTDQGDT
DMISGEQIDKIEFDQINAKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVL
TEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQAAVVPP
APEVEPMALPPAE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctttaatccgacgacgccggctcaggtcttcgaccagatccggatctcgatc
gcgagccccgagaagattctgtcctggtcgtacggcgagatcaagaagccggaaaccatc
aactaccgtaccttcaagcccgagcgcgacggcctgttctgcgcccgcatcttcgggccg
atcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaagtacaagggcatcatc
tgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgcgagcgcatgggccat
atcgagctcgcagcccccgtcgcccacatctggttcctgaagtcgctgccctcgcgcatc
ggcctcctgctcgacatgacgttgaaggatctcgagcggatcctctacttcgaatattac
gtcgtgctcgagccgggcctcaccgcgctgaaggaccgtcagctcttgtcggaagacgag
tacctgaaggcgcaggacgaatacggccaggattccttcaccgccatgatcggcgcggaa
gcgatccgcgagctgctcaagggcatggatctcgagaagctcgagctgaccttgcgcgcg
gagatgcaggagaccgactccgacatcaagcacaagaagctcgccaagcgcctgaagatc
gtggaagcgttccgccactccggcaacaagccggaatggatgatcatgaccgtggtcccg
gtgattccgccggacctgcgtccgctggtgccgctggacggcggccgtttcgcgacctcg
gacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgtttgaagcggctgatg
gagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatgcttcaggaggccgtc
gacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggtgccaataagcgtccg
ctgaagtcgctcgccgacatgctcaagggcaagcagggccggttccgtcagaacctgctc
ggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggtcccgagctgcgcctg
catcagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttcatctactcg
cggcttgacgccaagggtctgtccacaaccgtgaagcaggccaagaagctggtcgagaag
gagcggcccgaggtctgggacatcctggacgaggtcattcgcgagcatccggtgctgctc
aaccgcgcaccgacgctgcatcgcctcggcatccaggcgttcgagcccgtgctgatcgag
ggcaaggcgatccagctccacccgctggtctgcgccgcgttcaacgccgacttcgacggc
gaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctggaagcgcgcgtcctg
atgatgtcgaccaacaacatcctgcatccggcgaacggccagccgatcatcgtgccgtcg
caggacatcgtgctcggtctctactacgtctccatcatgcgcgaaggcctgcccggcgag
ggcaagatcttcggcgagatggcggagctcgagcacgcgctgcacgcgaaggtcatccac
ctccacaccaagatcaagtaccggtgggaaggcatcgacgataccggcaagatctccaag
cgctggatcgagaccaccgccggccgcgtcatgctgggcaatctgctgccgaagaacccg
cgtgttccgtacgagatcatcaacaagctgatgaccaagcgcgagatctccggcgtcatc
gaccaggtctaccgccactgcggtcagaaggagacggtgatcttctgcgaccgcatcatg
gcgctcggcttctacaacgcgttcaaggccggcatctcgttcggcaaggacgacatggtc
gtgccgcactccaagtggaagatcgtcgataccacccgtacgctggcgaaggatttcgag
cagcagtacaacgacggtctgatcacccatggcgagaagtacaacaaggtcgtggacgcc
tggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggagatctcctcgaccaag
aagacggcgagcggggcggatgccgacatcaactcgatctacatgatggctcactccggt
gcccgcggttcgccggcccagatgcgccagctcgccggcatgcgcggcctgatggccaag
ccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggcctctcggtg
ctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcggacaccgcgttgaag
accgcgaactccggctacctgacccgtcgtctcgtcgacgtcgcgcaggattgcatcatc
acgcaggacgattgcggcaccaagctcggcatcaagatgcgcgccatcgtcgatgccggc
accgtggtcgcttccctcggctcgcgcatcctcggacgcacggcctgcgaagacgtgcgt
gacagcacgggcaaggtgatcttcaagcgcggtacgctgatggaagagagccatctggat
gccatccatcagggcggcgtccaggaggtgaagatccgctcggcgctgacctgcgagctc
gtcaacggcatctgcggcaagtgctacggccgcgatctcgctcgcggcacgccggtcaac
catggcgaagcggtcggggtcatcgcggcccagtcgatcggcgagccgggcacccagctc
accatgcgcaccttccacatcggcggtgcggcgcagctgaacgagcaatctttcgtcgaa
tccaacttcgacggcaagatcgtgatcaggaacaaggccatcgcccgcaacagcgaaggc
cacctggtcgcgatggttcgcaacatggtgatcgcgatcgtcgatgccgacggcaccgag
cgtgcgacgcaccgtattcagtacggttcgcgcctgcacgtcgacgagggcgacatggtc
aagcgcggccagcgtatcgtcgaatgggatccctacacccgtccgctcctcaccgaggtc
gaaggcaccatcggattcgaggatctggtcgagggacagtcgatctcggaaacgctcgac
gaggccaccggtatcgccaagcgcgtggtcatcgactggcgctcgatgcgcggcggcggg
gacctgcgtcccgccatcgtgatcaagggcaaggacggcaaggtgctcaagctcgcccgt
ggcggcgatgcccgctacatgctgtcggtcgacggcattctgtcggtcgacgtcggagcc
aaggtccaggcgggcgacattctcgcccgtgtctcgaccgaaagcgccaagacgcgcgac
atcaccggcggtctgccgcgggtggcggaactgttcgaggctcggcgtccgaaggatgcg
gcgatcattgccgaaatcgcgggcaccatccggtttgggcgcgactacaagaacaagcgt
cgcatctcgatcgagccgatggacaagaccgacgaggcgcgcgagtacctgatcccgaag
ggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggcgacttcatcgtggaa
ggcaacccggcgccgcacgacattctggcggtcaagggcatcgaggaactcgcggcctat
ctggtcaacgaaatccaggaggtctaccggctccagggcgtgctcatcaacgacaagcac
atcgaggtgatcgtccgtcagatgctccagaaggtggaagtcaccgaccagggcgacacg
gacatgatctcgggcgagcagatcgacaagatcgagttcgaccagatcaacgcgaaggcc
aaggaagagggcaagaagatcgccacgggaacgccggttctgctcggcatcaccaaggcg
agccttcagacccgctccttcttctcggcagcctcgttccaggagaccacccgcgtcctc
acggaagcggcggtcaacggcaaggtcgatccgctcgaaggcctcaaggagaacgtcatc
gtcggccggctgattccggcaggcaccggcgcctccatggcgaagatccgcgaagtcgcc
gtgaagcgcgacaagatgatcctcgacgagcgcgagaagcaggcggccgtcgtgccgccg
gcgccggaagtggagccgatggcgctgccacctgcggaataa
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