Bradyrhizobium sp. BF49: BF49_6654
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Entry
BF49_6654 CDS
T04337
Name
(GenBank) Metallobetalactamase family protein RNAspecific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
brad
Bradyrhizobium sp. BF49
Pathway
brad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF49_6654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brad03019
]
BF49_6654
Messenger RNA biogenesis [BR:
brad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BF49_6654
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
RNase_J_C
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
CUT15574
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All DBs
Position
I:6782772..6784442
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AA seq
556 aa
AA seq
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MAKPEELVFAPLGGVGEIGMNLSIYGLGNRQQRAWLAIDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATQFSAALFEAKCAAERNAPKI
PVTVVPSGGRVDIGPFNVEFIPVAHSIPESHALAIHTEIGTVLHTGDWKIDPTPIIGRPT
DEKRLRELGDAGLLALIGDSTNAVRDGRSPSEAEVARSITELVKAAKGRVAVTTFASNVA
RLKAVAIAAKAADREVVVVGRAMERVVQVARETGYLDGVQSFRSAEVYGHLPQDKVLALC
TGSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGAIINGLVLQGVEVIT
DRDQLVHVSGHPRRDELRDMIAWTRPQLLIPVHGEALHLNEHAKLARAAGVPRVLVCRNG
DLVKLGPGDPGIIGQVPAGRLYKDGTILEDSKSRAVVERRRMAFSGCAFVAIAMTEQGEL
ADDPAVELVGIPEKNKAGEPFDDIVFDAVVSTVEGLPKARRRDPDALAESVRRAVRSVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctgaagaactggtattcgcaccgctcggcggggtcggcgaaatcggcatg
aatttgtcgatctacggcctcggcaaccgccagcagcgcgcctggctcgcgatcgatctc
ggcgtctccttcggcgacgaagagcatctgccgggcatcgacctgatcatgcccgacatc
agcttcctggagaaggaacgcaagaacctgatggggctggtgctgacccacgcccatgag
gaccatttcggcgccatcatcgacctgtggccgaagctgaaatgcccgatctacgcgacc
cagttcagcgccgcgctattcgaggccaaatgcgccgccgagcgcaatgcgccgaagatc
ccggtgacggtggtgccgtcgggcgggcgcgtcgatatcgggccgttcaacgtcgagttc
atcccggtcgcgcattcgattccggagtcgcacgcgctggcgattcacaccgaaatcggc
acggtgctgcacaccggcgactggaagatcgatccgaccccgatcatcggccgcccgacc
gacgaaaagcggctgcgggagctcggcgatgcgggcctgctcgccctgatcggcgattcc
accaacgccgtgcgcgacggccgctcaccctcggaagccgaggttgccagatccatcacc
gagctcgtcaaggccgccaagggccgcgtcgcggtcacgacctttgcctccaacgtcgcg
cgcctcaaggccgtcgcgatcgccgcgaaggccgccgaccgtgaggtcgtcgtggtcggc
cgtgccatggaacgcgtggtgcaggtcgcgcgcgagaccggctatctcgacggcgtgcag
agtttccgctccgccgaggtctacggtcacctgccgcaggacaaggtgctggcgctctgc
accggcagccagggcgagccgcgggccgcgctggcgcgcatcgccaatgacgaccatccc
gagatcacgctcaaccgcggcgacagcgtgatcttctcctcgcgcaccattcccggcaac
gagaaggcggtcggcgcgattatcaatggcctggttctgcagggcgtggaggtcatcacc
gaccgcgaccagctggtccatgtctccggccatccccgacgcgacgaattgcgtgacatg
atcgcctggaccaggccgcagctcctgattcctgtccatggcgaggccctacacctgaac
gagcacgccaagctcgcgcgtgccgctggcgtgccgcgcgtgctggtctgccgcaacggc
gatctcgtcaagctcggcccgggcgatcccggcatcattgggcaggtgcctgcgggccgt
ctctacaaggacggcacgattctggaggactccaagtcccgcgcggtggtcgagcggcgc
cggatggccttctccggctgcgccttcgtcgccatcgccatgacggagcagggcgagctt
gccgacgatcccgcggtcgaactggtcggtatccccgagaagaacaaggcgggcgagccc
ttcgacgacatcgtcttcgacgccgtggtttccaccgtcgaaggtctgccaaaggcgcgc
cgccgcgacccggatgcgctggctgagtcggtgcgacgcgctgtccgttccgtgatcaac
gaacattggggcaagaagcccccctgtctggtacacgtgctgacagtataa
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