Bradyrhizobium sp. BWC-3-1: RX329_18930
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Entry
RX329_18930 CDS
T11861
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brah Bradyrhizobium sp. BWC-3-1
Pathway
brah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RX329_18930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brah03021
]
RX329_18930 (rpoC)
03400 DNA repair and recombination proteins [BR:
brah03400
]
RX329_18930 (rpoC)
Enzymes [BR:
brah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RX329_18930 (rpoC)
Transcription machinery [BR:
brah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RX329_18930 (rpoC)
DNA repair and recombination proteins [BR:
brah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RX329_18930 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WOH62051
LinkDB
All DBs
Position
3926736..3930932
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLELTLRAEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGEMAELEHALH
AKVIHLHTKIKYRWEGIDETGKISRRWIETTAGRVMLGNLLPKNPRVPYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDATRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDVRDSTGKVIFKRGTLMEESHLDAIHQGGVQEVKIRSALTCELVNGICGKCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAIA
RNSEGHLVAMVRNMVIAIVDADGTERATHRIQYGSRLHVDEGDMVKRGQRIVEWDPYTRP
LLTEVEGTIGFEDLVEGQSISETLDEATGIAKRVVIDWRSMRGGGDLRPAIVIKGKDGKV
LKLARGGDARYMLSVDAILSVDVGAKVQAGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTEEAREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQIDKIEFDQINAKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQA
AVVPPAPEVEPMALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctctttaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgagccccgagaagattctgtcctggtcgtacggcgagatcaag
aagccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggcctattctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcggcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgctcgacatgacgttgaaggatctcgagcggatcctc
tatttcgaatattacgtcgtgctcgagccgggcctcaccgcgctgaaggaccgtcagctc
ttgtcggaagacgagtatctgaaggcgcaggacgaatacggccaggattccttcaccgcc
atgatcggcgcggaagcgattcgcgagctgctcaagggcatggacctcgagaagctcgag
ctgaccttgcgtgcggagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtggaagcgttccgccactccggcaacaagccggaatggatgatc
atgacggtggttccggtgattccgccggacctgcgtccgctggtgccgctggatggcggc
cgcttcgcgacctcggacctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaggctgtcgacgcgctgttcgacaacggccgccgtggccgcgtcatcaccggt
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggtctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctactcgcggcttgacgccaagggcctgtccaccaccgtgaagcaggccaag
aagctggtcgagaaggagcggcccgaggtctgggacatcctggacgaggtcatccgcgag
catcccgtgctgctcaaccgcgcaccgacgctgcatcgcctcggcatccaggcgttcgag
cccgtgctgatcgagggcaaggcgatccagctccacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctggaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggtctctactacgtctccatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgagatggcggagctcgagcacgcgctgcac
gcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcatcgacgagacc
ggcaagatctccaggcgctggatcgagaccaccgccggccgcgtcatgctgggcaatttg
ctgccgaagaacccgcgcgttccgtacgagatcatcaacaagctgatgaccaagcgcgag
atctccggcgtcatcgaccaggtctaccgccactgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgcactccaagtggaagatcgtcgacgctacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggtctgattacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctcctcgaccaagaagacggcgagtggggcggatgccgacatcaactcgatctacatg
atggctcactccggtgcccgcggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactccggctatctgacccgtcgtctcgtcgacgtcgcg
caggattgcatcatcacgcaggacgattgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggtcgcttcgctcggctcgcgcatcctcggacgcacggcc
tgcgaagacgtgcgtgacagcacgggcaaggtgatcttcaagcgcggtacgctgatggaa
gagagccatctggatgccatccatcagggcggcgtccaggaggtgaagatccgctcggcg
ctgacctgcgagctcgtcaacggcatctgcggcaagtgctacggccgcgatctcgctcgc
ggcacgccggtcaaccacggcgaagcggtcggggtcatcgcggcccagtcgatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggtgcggcgcagctgaacgag
caatctttcgtcgaatccaacttcgacggcaagatcgtgatcaggaacaaggccatcgcc
cgcaatagcgaaggccacctggtcgcgatggttcgcaacatggtgatcgcgatcgtcgat
gccgacggcaccgagcgtgcgacgcaccgtattcagtacggttcgcgcctgcacgtcgac
gagggcgacatggtcaagcgtggccagcgtatcgtggaatgggatccctacacccgtccg
ctcctcaccgaggtcgaaggtactatcggcttcgaggatctggtcgagggacagtcgatc
tcggaaacgctcgacgaggccaccggtattgccaagcgcgtggtcatcgactggcgctcg
atgcgcggcggcggggacctgcgtcccgccatcgtgatcaagggcaaggacggcaaggtg
ctcaagctcgcccgtggtggcgatgcccgctacatgctgtcggtcgatgccattctgtcg
gtcgatgtcggcgccaaggtccaggcgggcgacattctcgcccgtgtctcgaccgaaagc
gccaagacgcgcgacatcaccggcggtctgccgcgggtggcggaactgttcgaggctcgg
cgtccgaaggatgcggcgatcatcgccgaaatcgcgggcaccatccggtttgggcgcgac
tataagaacaagcgtcgcatctcgatcgagccgatggacaagaccgaagaggcgcgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtggaaggcaatccggcgccgcacgacattttggcggtcaagggcatcgag
gaactcgcggcctatctggtcaacgagatccaggaggtctatcggctccagggcgtgctc
atcaacgataagcacatcgaggtgatcgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacacggacatgatctcgggcgagcagatcgacaagatcgagttcgaccag
atcaacgcgaaggccaaggaagagggcaagaagatcgccacggggactccggttctgctc
ggcatcaccaaggcgagccttcagacccgctccttcttctcggcggcctcgttccaggag
accacccgagtcctcacggaagcggcggtcaacggcaaggtcgatccgctcgaaggcctc
aaggagaacgtcatcgtcggccggctgattccggcaggcaccggcgcctccatggcgaag
atccgcgaagtcgctgtgaagcgcgacaagatgatcctcgacgagcgcgagaagcaggcg
gcggtcgtgccgccggcgccggaagtggagccgatggcgctgccacctgcggaatga
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integrated database retrieval system
