Bradyrhizobium sp. BWC-3-1: RX329_21225
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Entry
RX329_21225 CDS
T11861
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
brah Bradyrhizobium sp. BWC-3-1
Pathway
brah03030
DNA replication
brah03430
Mismatch repair
brah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RX329_21225 (dnaE)
03430 Mismatch repair
RX329_21225 (dnaE)
03440 Homologous recombination
RX329_21225 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brah03032
]
RX329_21225 (dnaE)
03400 DNA repair and recombination proteins [BR:
brah03400
]
RX329_21225 (dnaE)
Enzymes [BR:
brah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RX329_21225 (dnaE)
DNA replication proteins [BR:
brah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RX329_21225 (dnaE)
DNA repair and recombination proteins [BR:
brah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RX329_21225 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
HHH_3
DUF655
T2SSK
DUF6374
Motif
Other DBs
NCBI-ProteinID:
WOH62482
LinkDB
All DBs
Position
4376611..4380108
Genome browser
AA seq
1165 aa
AA seq
DB search
MPSAGFVHLHVHSAYSLLKGSIKIAKLAELAKKDHQPALALTDTDNMFGALEFSDKMAGS
GIQPIVGCEIAIEFGDQDPNARNVLLPSRVVLLAAQERGYRSLMRLNSRAFLETPDTHAP
HIKFDWLEGETEGLIALTGGPDGPISLALAGGYTELAAARCERLASLFGDRLYIELQRHN
IEKERRVESSLIDIAYTKGLPLVATNEPYFATTDDYEAHDALLCIAGGRLIAETEREQLT
PDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASSDAAAVE
AAELKRQAEEGLANRLRVHGLSQGTTEEDYNARLAFELDVIMRMKYAGYFLIVSDFIKWA
KGQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQDRR
GEVIRYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV
TLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMY
RDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRNIHVDLATLPIDDA
ESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKH
GDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRAEME
KQREIFVAGAVKNGVPKGQADTIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHYPVE
FIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPNVNRSGATFEVGDKTIYYALAALKGVG
IAAVEQIIAERTKNGMFTSLADFAARVSPRAINKRIIESLAAAGAFDTLEPNRARVFAGA
DSILAACQRANEAATIGQNDMFGSSADAPTIMLPQIEPWLPAERLRREYDAIGFFLSGHP
LDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSDPTG
HFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDEAAAKTQKGLRI
FVRDTKPLESIAKRLAGPDMANGAAPKVGSPGIAPRSNGDGEVSLVMMLDLETEVEMKLP
GRFKVSPQIAGAIKAVAGVVDVQQL
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgccggatttgtccaccttcacgttcactcggcctattcgctgctcaagggc
tcgatcaagatcgccaagctcgccgagctagcgaagaaagaccatcagccggcgctggcg
ttgaccgacaccgacaacatgttcggtgcgctggagttctccgacaagatggcgggctcc
ggtatccagccgatcgtgggctgcgagatcgcgatcgagttcggcgaccaggatcccaat
gcgcgcaacgtgctgctgccctcgcgcgtggtgctgctggccgcgcaggagcgcggctat
cgcagcctgatgcggctgaactcgcgcgcgttcctggagacgcccgacactcatgctccc
cacatcaagttcgactggctcgaaggcgagaccgaaggtctgatcgcgctgacgggcggt
ccggacggaccgatctcgctggcgcttgccggcggttataccgagctcgcggcggcgcgc
tgcgagcgtctggccagcctgttcggagaccgtctctacatcgaattgcagcgccacaac
atcgagaaggagcggcgggtcgaaagcagcctgattgacatcgcctacaccaagggcctg
ccgctggttgcgaccaacgagccgtatttcgccacgaccgacgattatgaagcccatgac
gcgctgctctgcatcgccggcgggcggctgatcgcggagaccgagcgcgagcagctcacg
cccgatcaccgcttcaagacccgcgccgagatggcggtgctgttcgccgacattccggag
gcgctggcctcgacggtggagatcgccgagcgctgctcgttccggccgatgacgcgcaag
ccgatcctgccgttcttcacggtcggcgctgccgcaagctccgatgccgccgcagtcgag
gcggccgaattgaagcggcaggcggaggaggggctcgccaaccgcctgcgcgtgcacggc
ctctcgcaaggcacgacggaagaagattacaacgcgcggcttgcgttcgagctcgacgtc
atcatgcgcatgaaatacgcgggctactttctgatcgtctccgacttcatcaaatgggca
aagggccagggcattccggtcgggccgggccgcggctccggcgcaggctcgctggtggcg
tgggcgctgaccatcaccgacctcgacccgatcaagttcggcctgctgttcgagcgcttc
cttaatccggaacgcgtctcgatgccggacttcgacatcgacttctgccaggatcgccgc
ggcgaggtgatcaggtacgtccaggagcgctacggtcgcgaccaggtcgcgcagatcatc
accttcgggacgctgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtgctgcagatg
ccctatggccaggtcgacaagctcacaaaactcgtgccgcagaatccggccgcgccggtg
acgctggccgccgcgatcgagagcgagccaaaactccaggcgttccgcgacgaggatccg
gtggtggcgcgcgccttcgacatcgcgcagcgcctcgaaggcctgacccgtcacgcctcg
acgcacgcggccggcatcgtgatcggcgatcgcccgctgagcgaactcgtgccgatgtat
cgcgatcccaaatccgacatgccggtgacccagttcaacatgaaatgggtcgagcccgcg
ggcctcgtgaagttcgacttcctcggcctgaaaacgctgaccgtactcgacgtcgcgtgc
aaactgctcaagccgcgcaacatccacgtcgatctcgcgacgctgccgatcgacgatgcc
gaaagctaccagatgctggcgcgcggcgaggtggtcggcgtgttccaggttgaaagccag
ggcatgcggcgcgcgctggtcgacatgcgccccgaccgtttcgaggacatcatcgcgctg
gtcgcgctctatcgaccgggtccgatggcgaacatcccgacctattgcgcgcgcaagcac
ggcgacgaggagccggaatatctccaccccgtgctggagccgattctcaaggagaccttc
ggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgatgtcgggctattcg
cttggcgacgccgacctgctgcgccgcgccatgggcaagaagatccgcgccgagatggag
aagcagcgcgagatcttcgtcgcaggcgcagtgaagaacggcgtgccgaaggggcaggcc
gataccatcttcgagctgctggcgaaattcgccgactacggcttcaacaagagccacgcg
gcggcctatgcgctggtgtcctaccacaccgcctacatgaaggcgcattacccggtggag
ttcatcgccgcgtcgatgacgcttgatctcaacaataccgacaagctgtccgaattccgc
gccgaggcgcagcgcctcggcatcaaggtcgagccgcccaatgtcaaccgttccggcgcg
actttcgaagtcggcgacaagaccatctactacgcgctcgcggcgctgaagggcgtcggt
attgcggccgtcgagcagatcatcgcggagcggaccaaaaacggcatgttcacctcgctc
gccgactttgccgcgcgggtgtcgccgcgcgcgatcaacaagcgcatcatcgaaagcctc
gccgccgcgggcgccttcgacacgctggagccgaacagggcgcgggtcttcgccggcgcc
gactcgattctcgccgcatgccagcgggcgaacgaagctgcaaccatcggccagaacgac
atgttcggcagctcggccgacgcgccgaccatcatgctgccgcagatcgagccctggttg
ccggccgagcggctgcgccgcgaatatgacgcgatcggcttcttcctgtcgggacatccg
ctcgacgattacgccaccgtgctgaagcggctgcgcgtgcagtcctgggccgagttctcc
cgcgcggtgaagaccggcgccaccgccggcaaggtcgcggccaccgtggtgtcgcgcatg
gagcggcggaccaagaccggcaacaagatgggcatcatggggctctctgatcccacgggt
cactttgaggcggtgctgttctccgaaggcctcgcgcaatatcgcgacgtcctggaaccg
ggcgccgcggtgctgctccagctcggcgccgagctccagggcgaggacgtccgcgcgcgc
gtgctgcacgccgagccgctggacgaggccgcggccaagacgcagaagggcctgcgcatc
ttcgtgcgcgacaccaagccgctggaatcgatcgccaagcgtctcgccggccccgacatg
gcgaacggcgccgcgccgaaggtcggcagtccgggcatcgcgccccgctccaacggcgac
ggcgaggtctcgctggtcatgatgctcgacctcgaaaccgaggtcgagatgaagctgccc
ggccgcttcaaggtctcgccgcagatcgccggcgccatcaaggcggtcgccggtgtggtg
gacgtgcagcagctctag
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integrated database retrieval system
