Bradyrhizobium sp. I71: FJV43_00265
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Entry
FJV43_00265 CDS
T11002
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
brai Bradyrhizobium sp. I71
Pathway
brai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJV43_00265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brai03019
]
FJV43_00265
Messenger RNA biogenesis [BR:
brai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FJV43_00265
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
ULK98241
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Position
complement(58114..59784)
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AA seq
556 aa
AA seq
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MARPDELVFAPLGGVGEIGMNLSIYGLGNRHQRAWLAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATKFSAALFEAKCAAERNAPEI
PVTVIPSGGRIDVGPFNVEFIPVAHSIPEAHALAIRTEAGTVLHTGDWKIDPTPILGAPT
DEKRLRELGEQGVLALIGDSTNAVRDGRSPSEAEVARTIIELVKSAKGRVAVTTFASNVA
RIKAVAAAAKAADREVVVVGRAMERVVQVARETGYLDGVQNFRSPDIYGHLPQDKVLALC
TGSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGSIINNLVLQGVEIIT
DRDALVHVSGHPRRDELRDLISWVKPQLLIPVHGEALHLHEHAKLARAAGVPRVLVCRNG
DLVKLGPGDPGIVGEVPSGRLYKDGTILEDSKSRAVVERRRMAFSGCAFVAIAMTGQGEL
ADDPEVDLVGIPEKNRAGEPFDDIVFDAVMSTIEGLPKARRRDPDALGESVRRAVRAVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggcccgacgaactggtatttgcgcccctcggcggcgtcggcgagatcggcatg
aacctgtcgatctacggcctcggcaaccgccaccagcgcgcctggctggcggtcgatctc
ggcgtgtccttcggcgacgaggagcatctgccgggcatcgacctgatcatgcccgacatc
agcttcctggagaaggagcgcaagaacctgatgggcctcgtgctgacccacgcccatgag
gaccatttcggcgccatcatcgatctctggccgaagctgaaatgcccgatctacgccacc
aagttcagcgcggcgctgttcgaggccaaatgcgccgccgagcgcaatgcgcccgagatc
cccgtgaccgtcatcccgtccgggggccgcatcgatgtcggcccgttcaacgtcgagttc
atccccgtcgcgcattcgattccggaagcgcatgcactggcgatccgcaccgaagccggc
acggtgctgcacaccggcgactggaagatcgacccgactccgatcctgggcgccccgacc
gacgagaagcggctgcgcgaattgggcgagcagggcgtgctcgccctgatcggcgattcc
accaacgccgtgcgcgatggccgctcaccgtcggaagccgaggttgcccggaccatcatc
gagctcgtcaaatcggccaagggccgcgtcgccgtgacgaccttcgcctccaatgtcgcg
cgcatcaaggccgtggccgccgccgccaaggctgccgaccgcgaggtcgtcgtggtcggc
cgcgccatggagcgcgtggtgcaggtggcgcgcgagaccggctatctcgacggcgtgcag
aatttccgctcgcccgacatctacggccatctgccgcaggacaaggtgctggcgctgtgt
accggcagccagggcgagccgcgcgccgcgctggcgcgcatcgccaatgacgaccatccc
gagatcacgctcaaccgcggcgacagcgtcatcttctcctcgcgcaccattcccggcaac
gagaaggccgtcggctcgatcatcaacaatctcgtgctgcagggcgtcgagatcatcacc
gaccgcgacgccctggtccacgtctccggccatccccgtcgcgacgagctgcgcgacctg
atctcctgggtgaagccgcaactcctgatcccggtccacggcgaggccctgcatctgcac
gagcacgcaaaactggcgcgcgccgcgggcgtgccgcgcgtgctggtctgccgcaacggc
gacctcgtcaagctcggccccggcgatcccggcatcgtcggcgaggtgccgtcggggcgt
ctctacaaggacggcacgatcttggaggattccaagtcccgcgccgtggtcgagcggcgg
cgcatggcgttctccggctgcgccttcgtcgccatcgccatgaccgggcagggcgagctc
gccgacgatcccgaggtcgatctggtcggcatccccgagaagaacagggcgggcgagccc
ttcgatgacatcgtcttcgacgccgtgatgtctaccatcgagggcctgccgaaggcgcgt
cgccgcgatcccgacgccttgggcgagtcggtgcgacgcgccgtccgggccgtgatcaac
gaacattggggcaaaaagcctccctgtctggtacacgtactgacagtgtaa
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