KEGG   Bradyrhizobium sp. I71: FJV43_00265
Entry
FJV43_00265       CDS       T11002                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
brai  Bradyrhizobium sp. I71
Pathway
brai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FJV43_00265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brai03019]
    FJV43_00265
Messenger RNA biogenesis [BR:brai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FJV43_00265
SSDB
Motif
Pfam: RNase_J_b_CASP RMMBL RNase_J_C Lactamase_B_2 Lactamase_B
Other DBs
NCBI-ProteinID: ULK98241
LinkDB
Position
complement(58114..59784)
AA seq 556 aa
MARPDELVFAPLGGVGEIGMNLSIYGLGNRHQRAWLAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATKFSAALFEAKCAAERNAPEI
PVTVIPSGGRIDVGPFNVEFIPVAHSIPEAHALAIRTEAGTVLHTGDWKIDPTPILGAPT
DEKRLRELGEQGVLALIGDSTNAVRDGRSPSEAEVARTIIELVKSAKGRVAVTTFASNVA
RIKAVAAAAKAADREVVVVGRAMERVVQVARETGYLDGVQNFRSPDIYGHLPQDKVLALC
TGSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGSIINNLVLQGVEIIT
DRDALVHVSGHPRRDELRDLISWVKPQLLIPVHGEALHLHEHAKLARAAGVPRVLVCRNG
DLVKLGPGDPGIVGEVPSGRLYKDGTILEDSKSRAVVERRRMAFSGCAFVAIAMTGQGEL
ADDPEVDLVGIPEKNRAGEPFDDIVFDAVMSTIEGLPKARRRDPDALGESVRRAVRAVIN
EHWGKKPPCLVHVLTV
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggcaaggcccgacgaactggtatttgcgcccctcggcggcgtcggcgagatcggcatg
aacctgtcgatctacggcctcggcaaccgccaccagcgcgcctggctggcggtcgatctc
ggcgtgtccttcggcgacgaggagcatctgccgggcatcgacctgatcatgcccgacatc
agcttcctggagaaggagcgcaagaacctgatgggcctcgtgctgacccacgcccatgag
gaccatttcggcgccatcatcgatctctggccgaagctgaaatgcccgatctacgccacc
aagttcagcgcggcgctgttcgaggccaaatgcgccgccgagcgcaatgcgcccgagatc
cccgtgaccgtcatcccgtccgggggccgcatcgatgtcggcccgttcaacgtcgagttc
atccccgtcgcgcattcgattccggaagcgcatgcactggcgatccgcaccgaagccggc
acggtgctgcacaccggcgactggaagatcgacccgactccgatcctgggcgccccgacc
gacgagaagcggctgcgcgaattgggcgagcagggcgtgctcgccctgatcggcgattcc
accaacgccgtgcgcgatggccgctcaccgtcggaagccgaggttgcccggaccatcatc
gagctcgtcaaatcggccaagggccgcgtcgccgtgacgaccttcgcctccaatgtcgcg
cgcatcaaggccgtggccgccgccgccaaggctgccgaccgcgaggtcgtcgtggtcggc
cgcgccatggagcgcgtggtgcaggtggcgcgcgagaccggctatctcgacggcgtgcag
aatttccgctcgcccgacatctacggccatctgccgcaggacaaggtgctggcgctgtgt
accggcagccagggcgagccgcgcgccgcgctggcgcgcatcgccaatgacgaccatccc
gagatcacgctcaaccgcggcgacagcgtcatcttctcctcgcgcaccattcccggcaac
gagaaggccgtcggctcgatcatcaacaatctcgtgctgcagggcgtcgagatcatcacc
gaccgcgacgccctggtccacgtctccggccatccccgtcgcgacgagctgcgcgacctg
atctcctgggtgaagccgcaactcctgatcccggtccacggcgaggccctgcatctgcac
gagcacgcaaaactggcgcgcgccgcgggcgtgccgcgcgtgctggtctgccgcaacggc
gacctcgtcaagctcggccccggcgatcccggcatcgtcggcgaggtgccgtcggggcgt
ctctacaaggacggcacgatcttggaggattccaagtcccgcgccgtggtcgagcggcgg
cgcatggcgttctccggctgcgccttcgtcgccatcgccatgaccgggcagggcgagctc
gccgacgatcccgaggtcgatctggtcggcatccccgagaagaacagggcgggcgagccc
ttcgatgacatcgtcttcgacgccgtgatgtctaccatcgagggcctgccgaaggcgcgt
cgccgcgatcccgacgccttgggcgagtcggtgcgacgcgccgtccgggccgtgatcaac
gaacattggggcaaaaagcctccctgtctggtacacgtactgacagtgtaa

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