Bradyrhizobium sp. I71: FJV43_14295
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Entry
FJV43_14295 CDS
T11002
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
brai Bradyrhizobium sp. I71
Brite
KEGG Orthology (KO) [BR:
brai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brai03019
]
FJV43_14295 (hrpB)
Enzymes [BR:
brai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FJV43_14295 (hrpB)
Messenger RNA biogenesis [BR:
brai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FJV43_14295 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
ResIII
AAA_30
HA2_N
CON_HrpB
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ULL00837
LinkDB
All DBs
Position
complement(2916946..2919420)
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AA seq
824 aa
AA seq
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MPRSFDTPLPIDAVLDDLSRTLEANSAAVLVAPPGAGKTTRVPLALLDAPWAKDKKIIVL
EPRRIAARASADRMAKSLGERAGETVGYRVRFGSKISRATRIEVVTEGIFTRQILDDPEL
SGVAAILFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVAKLLGDAPVV
ESEGRAFPVETRYLGRKADAPIERQMADAIASALRADSGSVLAFLPGAAEIRRTQTFLGE
RVHDASIEIVPLFGALDAAVQDRAIAPTPKGSRKVVLATSIAETSLTIEGVRIVVDSGLA
RVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTAALAPYTQPEIL
SADLSSLVLDLAQWGVSDPAALSFLDPPPGPAWKEAKSLLTELNALDADGRITAEGKSLR
SLALPPRLARMIVDSHRAGSGEAAAEIAAIITERGLGGDSVDLEHRRDQFRRDRSPRASS
ARDLARRWASQVAASEKAGQHEDLSTGLMLAYAFPDRVARNRGNGSFVLANGRGASVEQT
SSLARAPYIAIGEMTGTAASGRILLAAQITQDEIEQHFAEHIETADEISFDRGAMALRAR
RRRVLHAITLSEATLAVSPSEDTARILADGLIAAGLDRLPWSKTAKQWRDRVMFLRKAEG
EAWPDLSDDGLIARREDWLVPALYDKIALKDISAGDLSDALMALLPWDMRARLDREAPTH
FEAPTGSALAIDYEAEQGPTIAVRLQELFGLNTHPSIAAGKVPLVLELLSPAQRPVQVTR
DLPGFWRGSYAAVRSDLRGRYPRHPWPDDPANALPTRRAKPRGT
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttgccccgcagcttcgacacgcccctcccgatcgatgccgtgctcgacgatttgtcgcgc
acgctggaggccaacagcgccgccgtgctggtggcgccgcccggcgccggcaagaccacg
cgcgtgccgctggcgctgctggatgcgccctgggcgaaggacaagaagatcatcgtgctg
gagccgcggcgcatcgcggcgcgggccagtgccgatcgcatggccaaatcgctcggcgag
cgggccggcgagaccgtcggctatcgcgtccgcttcggctcgaagatctcgcgcgcgacg
cgcatcgaggtggtgaccgaaggcatcttcacccgccagattctcgacgaccccgaactg
tcgggcgttgccgcgatcctgttcgacgaatttcacgagcgctcgctcgacgccgatctc
ggcctcgcgcttgcccgcgatgcgcaaaccggcctgcgcgaggatctccgcatcctcgtg
atgtcggccacgctcgacggcgcgcgcgtggcaaagctgctcggcgatgcgcccgtcgtc
gaaagcgagggccgcgcctttccggtcgagacgcgttatctcggccgcaaggccgatgcg
ccgatcgagcggcagatggctgacgcgattgcgtccgcgctgcgcgccgacagcggctcg
gtgctggcgttcctgccgggcgccgcagagatccgccgcacccagacctttctcggcgag
cgcgtgcacgacgcctccatcgagatcgtgccgttgttcggcgcgctcgatgccgccgtg
caggaccgcgccatcgcgccgacgcccaagggctcgcgcaaggtggtgctggcgacctcg
atcgccgagacctcgctcacgatcgaaggcgtgcgcatcgtggtcgattccggtcttgcc
cgcgtgccgcgttacgagcccgacatcggcttgacccggctcgagaccgtgcgcgcctcg
cgcgcggcggtggaccagcgccgcggccgcgccggccgcaccgagcccggtgtctgctac
cggctctgggacgagccgcagacggccgcgcttgcgccctacacccagccggaaatcctc
agcgccgatctgtcctcgctggtgctcgatctcgcgcaatggggcgtcagcgatcccgcc
gcactgtcgttcctcgatccgccgcccgggccggcctggaaggaagcgaagagcctgctg
accgagctcaacgcgctcgacgccgacggccgcatcaccgccgagggcaagagcctgcgt
tcgctggcgctgccgccgcggctggcgcgcatgatcgtggattcgcatcgcgcgggcagc
ggcgaggccgccgccgagatcgccgccatcatcaccgagcgtgggctcggcggcgacagt
gtcgatctcgagcaccggcgcgaccagttccgccgcgaccgctcgccgcgtgcgtccagc
gcgcgcgacctggcgcggcgctgggcctcgcaggtcgcggcgtcggagaaggcggggcag
cacgaggatctctcgaccggcctgatgctcgcctatgcctttccggaccgtgtcgcgcgc
aaccgcggcaatggcagtttcgtgctcgccaacggccgcggcgcttccgtcgagcagacc
tcctcgctcgcccgcgcgccctacatcgcgatcggcgagatgacggggacggcggcgagc
ggacgcatcctgctcgctgcgcagatcacccaggacgagatcgagcaacatttcgccgag
catatcgagaccgccgatgagatctcgttcgatcgcggcgcgatggcgctgcgcgcgcgg
cgcaggcgcgtgctgcatgccatcacgctgtccgaggcgacacttgccgtgtcgccctcg
gaggacaccgcgcgcatccttgccgatgggttgattgcggccggtctcgaccggctgccc
tggtcgaagaccgcaaaacaatggcgcgaccgcgtgatgttcttgcgcaaggccgagggt
gaggcctggcccgatctctccgacgacgggctgatcgcgcggcgcgaggattggctggtg
ccggcgctctacgacaagatcgccctcaaggacatctcggcgggcgatctctccgacgcg
ttgatggccctgctgccttgggacatgcgcgcgcggctggatcgcgaggcaccgacccat
ttcgaagcgccgaccggaagcgcgctcgcgattgattacgaggccgagcaggggccgacc
atcgcggtgcggctccaggaactgttcggtctgaacacccatccctcgatcgccgcgggc
aaggtgccgctggtgctggaattgctgtcgccagcccagcgtccggtgcaggtgacgcgc
gatctccccggcttctggcgcggcagctacgccgcggtccgctccgacctgcggggtcgc
tatccgcgccatccctggccggatgatcctgccaatgcgctgccgacccggcgggcgaag
ccgcgcgggacgtga
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