Bradyrhizobium sp. I71: FJV43_33150
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Entry
FJV43_33150 CDS
T11002
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
brai Bradyrhizobium sp. I71
Brite
KEGG Orthology (KO) [BR:
brai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brai03016
]
FJV43_33150
Enzymes [BR:
brai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FJV43_33150
Transfer RNA biogenesis [BR:
brai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FJV43_33150
Prokaryotic type
tRNA splicing ligases
FJV43_33150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
HTH_17
Motif
Other DBs
NCBI-ProteinID:
ULK97493
LinkDB
All DBs
Position
complement(7028888..7030228)
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AA seq
446 aa
AA seq
DB search
MRRPDPYMERARELCLAAGVDPDSRVGEGRGQPAWCLYKDAARKEHLAREANATASSIAE
FRMQDARFQNAPLKVFGPHEDATIAQMRNCMAVGNVVSGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAAKLDTRFDDIAGLVPTIIRDVAKTISFGVGRANAERAEHDLF
DDGDAWRESDMEAYRQKAVSQLGTVGSGNHYVDLMRDEEGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSELGRRYIAAMQLAGRYAYAGREWVVERVRRIIGGSVTE
SVHNHHNYAWRETHDGKDLWVVRKGATPAFPGQKGFVGGSMGDDAVILEGVDSPEAKASL
YSTVHGAGRLFGRREAKRRFSRAEMDQWLNERGVTLIGADLDESPMAYRRLPDVLAQHAG
TVRVLHTLRPFAVAMAGEGEFDPWKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgacccgatccctacatggaacgcgcccgcgagctctgcctcgccgccggtgtc
gatcccgactcgcgcgtcggcgaaggacgcggccagccggcctggtgtctgtacaaggac
gccgcgcgcaaggagcatctggcccgcgaggccaatgcaaccgcgagctcgatcgccgag
ttccgaatgcaggacgcccgcttccagaatgcgccgctgaaggtgttcggcccgcacgag
gacgcgacgatcgcgcagatgcgcaactgcatggcggtcggcaacgtcgtgtcgggcgtg
atctgcgccgacggtcatctcggctatgcgcagccggtcggcggcgtcatcgcctacgag
aagcagatcagcatctccggcgtcggcttcgatatcggctgcggcaacatggcggcaaag
ctcgatacgcgcttcgacgacatcgcaggcctcgtgcccacgatcatccgcgacgtcgcc
aagacgatctcgttcggcgtcggccgtgccaatgccgagcgggccgagcacgatctgttc
gacgacggcgatgcctggcgcgagagcgacatggaggcctaccgtcagaaggcggtgagc
cagctcggcacggtcgggtcgggcaaccactatgtcgacctcatgcgcgacgaggaaggc
ttcgtctggatcggcgtccactttggcagccgcggtctcggccacacctccgcgacgcgc
tacctcaaggccgccggcggcaaggacggcatgaacgtcccgcccgccgtggtcgacgag
gatagcgagctcggccgccgctacatcgcggcgatgcagctcgccgggcgttacgcctat
gcgggccgcgagtgggtcgtcgagcgcgtccgccggatcatcggcggcagcgtgaccgag
agcgtgcacaaccaccacaactatgcctggcgtgagacccacgacggcaaggatctgtgg
gtggtacgcaagggcgcgacgccggcgtttcccggccagaagggattcgtaggcggctcg
atgggcgacgacgccgtcatcctcgaaggcgtcgacagcccggaagccaaggcttcgctc
tactcgaccgtgcacggcgccggccgcctgttcggacgacgggaggcgaagcggcgcttc
tcgcgcgcggagatggaccagtggctcaacgagcgcggcgtcaccttgatcggtgccgac
ctcgacgagagcccgatggcctatcgccgcctgccggacgtgcttgcccagcacgcaggc
accgtgcgggtgctgcacacgttgcggccgttcgccgtcgccatggccggcgaaggcgag
ttcgatccgtggaaggactga
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