Bradyrhizobium zaerense LLZ17: AB8Z38_03165
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Entry
AB8Z38_03165 CDS
T11862
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bral Bradyrhizobium zaerense LLZ17
Pathway
bral03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bral00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB8Z38_03165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bral03021
]
AB8Z38_03165 (rpoC)
03400 DNA repair and recombination proteins [BR:
bral03400
]
AB8Z38_03165 (rpoC)
Enzymes [BR:
bral01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB8Z38_03165 (rpoC)
Transcription machinery [BR:
bral03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB8Z38_03165 (rpoC)
DNA repair and recombination proteins [BR:
bral03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB8Z38_03165 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_RND
RPOC_hybrid
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
XDV58537
UniProt:
A0AB39XQE1
LinkDB
All DBs
Position
645866..650062
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLELSLRAEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSVMREGLPGEGKRFGDMAELEHALH
AKVIHLHTKIKYRWQGMDETGKVSTRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDVRDSSGKVIIKRGTLMEESHLDAIHQGGVQEVKIRSALTCELVNGICGKCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAIA
RNSEGHLVAMVRNMVVAIVDADGTERATHRIQYGSRLHVDEGDTVKRGQRIAEWDPYSRP
LLTEVEGTIGFEDLVEGQSITETLDEATGIAKRVVIDWRSQRGGADLRPAIVVKGKDGKV
LKLARGGDARYMLSVDGILSVDVGAKVQAGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTDEAREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQIDKIEFDQINEKTREEGKKIATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQA
AVVPPAPEVEPMALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctctttaacccgacgacgccggctcaggtcttcgaccag
atccggatttcgatcgcgagccccgagaagattctgtcctggtcgtacggcgagatcaag
aagccggagaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcggcgcccgttgcccatatctggttcctgaagtcg
ctgccctcgcgcatcggcctgctgctggacatgacgctgaaggatctcgagcggatcctt
tactttgaatattacgtcgtgctggagccgggcctcaccgcgctgaaggaccgtcagctc
ttgtcggaagacgagtatctgaaggcgcaggacgagtacggccaggattccttcaccgcc
atgatcggcgcggaagcgatccgcgagctgctcaagggcatggacctcgagaagctcgaa
ttgagcttgcgcgcggagatgcaggagaccgactccgacatcaagcacaagaaactcgcc
aagcgcctgaagatcgtcgaggcgttccgccattccggcaacaagccggaatggatgatc
ctgaccgtggtcccggtgatcccgccggatctgcgtccgctggtgccgctggacggcggc
cgcttcgcgacgtcggatctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaggccgtcgacgcactgttcgacaacggccgccgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctattcgcggcttgacgccaagggcctgtccaccacggtgaagcaggcgaag
aagctggtcgaaaaggaacggcccgaggtctgggacatcctggacgaggtgatccgcgag
catccggtgctcctgaaccgcgccccgacgctgcatcgcctcggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagcttcatccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggccaacggtcagccg
atcatcgtgccgtcgcaggacatcgtgcttggtctgtattacgtctcggtgatgcgtgaa
ggcctgcccggcgagggcaagcggttcggcgacatggccgagctcgagcatgccctgcac
gcgaaggtcatccacctccacaccaagatcaagtatcggtggcagggcatggacgagacc
ggcaaggtctcgacgcgctggatcgagaccaccgcaggtcgcgtcatgctcggcaatctg
ctgccgaagaacccgagaatttcgtacgagatcatcaacaagctgatgaccaagcgcgaa
atctccggcgtgatcgaccaggtctaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaagccggcatctcgttcggc
aaggacgacatggtcgtgccgcactcgaagtggaagatcgtcgataccacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccacggcgagaagtacaac
aaggttgtcgacgcctggtcgaaggcgaccgaggaaatcgccaaggcgatgatgaaggag
atctcctccaccaagaagacggcaagcggagcggatgccgacatcaactcgatctacatg
atggcgcactccggtgcgcgcggttcgccggcgcagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactccggctacctgacgcggcgtctcgtcgacgtggcg
caggactgcatcatcacgcaggacgattgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggtcgcttcgctcggctcgcgcatcctcggacgcacggcc
tgcgaagacgtgcgtgacagctcgggcaaggtgatcatcaagcgcggtacgctgatggaa
gagagccatctggatgccatccaccagggcggcgtccaggaggtgaagatccgctcggcg
ctgacctgcgagctcgtcaacggcatctgcggcaagtgctacggccgcgatcttgctcgc
ggcacgccggtcaaccacggtgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggtacccagctcaccatgcgcaccttccacatcggtggtgcggcgcagctcaacgag
caatcgttcgtcgaatccaacttcgacggcaagatcgtgatcaggaacaaggccatcgcc
cgcaacagcgaaggccatctggttgcgatggtgcgcaacatggtggtcgcgatcgtcgat
gccgacggcacggagcgtgcgacgcaccgtattcagtacggttcgcgcctgcatgtcgac
gaaggcgacacggtcaagcgcggccagcgcatcgccgagtgggatccctacagccgtccg
ttgctcacggaagtggagggcaccatcggcttcgaggatctggtcgaggggcagtcgatc
acggaaacgctggacgaagccaccggtatcgccaagcgcgtggtcatcgactggcgctcg
cagcgcggcggcgcggatttgcgtccggccatcgtggtcaagggcaaggacggcaaggtc
ctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgacggcattctgtcg
gtcgacgtcggagccaaggtccaggcaggcgacatcctcgcccgtgtctcgaccgaaagc
gccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcacgg
cgtccgaaggatgcggcgatcatcgccgagatcgcgggcaccatccggttcggacgcgac
tacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgacgaggcgcgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtggaaggcaacccggcaccgcacgacatcctggcggtcaagggtatcgaa
gagctcgcggcctatctggtcaacgaaatccaggaggtctaccggctccagggcgtgctc
atcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacaccgacatgatttcgggcgaacagatcgacaagatcgagttcgaccag
atcaacgagaagaccagggaagagggcaagaagatcgccacgggtacgccggttctgctc
ggcatcaccaaggcgagcctccagacccgctccttcttctcggcggcttcgttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaaggtcgatccgctcgaaggtctc
aaggagaacgtcattgtcggccggctcatcccggcaggcaccggcgcctccatggccaag
atccgcgaagtcgccgtcaagcgcgacaagatgatcctcgacgagcgcgagaagcaggct
gccgtcgtgccgccggcgccggaagtggagccgatggcgctgccgcccgcggaataa
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