Bradyrhizobium sp. NDS-1: RX330_05970
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Entry
RX330_05970 CDS
T11383
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
bran Bradyrhizobium sp. NDS-1
Pathway
bran03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bran00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RX330_05970 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bran03400
]
RX330_05970 (uvrB)
DNA repair and recombination proteins [BR:
bran03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RX330_05970 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RX330_05970 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Kinesin
Microtub_bd
DUF2963
DUF87
Motif
Other DBs
NCBI-ProteinID:
WOH74667
LinkDB
All DBs
Position
complement(1261089..1264061)
Genome browser
AA seq
990 aa
AA seq
DB search
MAKKPASSEKSGKSPKTKAPNSKAHRPDVQPIGPALAELLNPAINRGDAGLGSGTGLQPP
PDNSRDRRSGGEAAAHRARASTPKEFPQDVTRPMPLRPHPQPPGARSSSELAGLEEAPQA
NYGTAATIPTLDPELARQLGLPTEEDDAEALARPPRSKMEALGVKATADALESLIREGRP
EFRKDDGSTKVWTPHRPPRPEKSEGGVRFEIKSSYEPRGDQPTAIAELVEGIGRNDRTQV
LLGVTGSGKTYTMAQVIEKTQRPALILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYY
QPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTA
MTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVNL
FGDTIETIEEFDPLTGHKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLHH
QGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALIF
ADESHVTIPQIGAMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQTIAVSATP
SGWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAQAGYRSLITVLTK
RMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECA
LVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSMERAIAETNRRREKQV
EYNTANGITPESVKKQIGDILNSVYERDHVLVEVGGHDMTDDVISIGHNFEAVLADLETR
MREAAADLNFEEAARLRDEVKRLRATELAVVDDPTVKQRTVAGKAGAYAGTKKYGEAANL
PVSAMKNKSAATALKAGAGKGSRVHKPHLDEMHGPESLPYREKQTLPAKPFGGNSRIIQP
TDSRQSGPEFGPAPKSTGGQPGRRGGWKKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaacctgcatcctccgaaaaatccggcaaatcccccaagaccaaggctccg
aactcgaaggcacatcgccccgatgtgcagccgatcgggccggcgctggccgaattgctc
aatcccgcgatcaaccgcggcgatgcggggcttggatccggcaccggcctgcagccgccg
ccggacaattcgcgcgaccggcgatccggcggcgaggccgcggcgcatcgggcgcgggcc
tcgacgcccaaggagtttccgcaggatgtgacgcggccgatgccgttgcggccccatccg
cagccgcccggcgcgcgctcgtcatccgaactggcgggcttggaggaagcgccgcaggcc
aattacggaaccgccgccacgatcccgacgctcgatccggaactggcgcggcagctcgga
ctgcccacggaggaagacgacgccgaggcgctggcgcgtccgccgcgcagcaagatggag
gcgctcggcgtcaaggcgaccgccgatgcgctggagtcgctgatccgcgagggccgtccg
gagttccgcaaggacgacggctccaccaaagtgtggacgccgcaccggccgccgcgcccg
gaaaagtccgaaggcggcgtgcgcttcgagatcaaatcgtcctacgagccgcgcggcgat
cagccgaccgcgatcgctgagctggtcgagggtatcggtcgcaacgaccgcacccaggtg
ctgctcggcgtcaccggctcgggcaagacctacacgatggcgcaggtgatagagaagacg
cagcgcccggcgctgatcctggcgccgaacaagacgctcgccgcccagctctacggcgag
ttcaagaacttcttcccggacaacgccgtcgagtatttcgtctcctattacgactactac
cagccggaagcctacgtcccgcgcaccgacacctatatcgagaaggattcctcgatcaac
gagcagatcgaccgcatgcgccactcggcgacgcgcgcgctgctcgaacgcgacgacgtc
atcatcgtcgcctcggtgtcctgcatctacggtatcggctcggttgagacctacaccgcg
atgaccttcgccctgaagaagggcgagcgcatcgaccagcgccagctcatcgccgacctc
gtcgcgctgcagtacaagcgcacccaggccgatttcacccgcggcacctttcgcgtgcgc
ggcgacgtcatcgacatcttcccggcgcactatgaggaccgcgcctggcgcgtgaacctg
ttcggcgacaccatcgagaccatcgaggagttcgatccgctcaccggccacaagcaggac
gagctcgaattcatcaagatgtacgccaattcgcactatgtgacgccgcgcccgacgctg
gtgcaggcgatcaagtcgatcaaatcagagctgaaacagcggctcgaccagctccatcat
cagggacgcctgctggaggcgcagcggctggagcagcgcaccactttcgacctcgagatg
atggaggcgacgggaagctgcgccggcatcgagaactattcgcgctatctcaccggacgc
cgccccggcgagccgccgccgacgttgttcgaatacgtccccgacaacgcgctgatcttc
gccgacgaaagccacgtcaccatcccgcagatcggcgccatgttccgcggcgacttccgc
cgcaaggcgacgctggccgagtacggctttcgcctgccgtcgtgcatggacaaccgcccg
ctccgcttcgaggaatgggacatgatgcggccgcagaccatcgcggtgtcggcgacgccc
agcggctgggagctgaacgagagcggcggcgtgttcgtcgagcaggtcatccgccccacc
ggactgatcgatcctcccgtcgatatccgaccggcccggacccaggtcgacgatctcgtc
ggcgaggtccgcgccacggcgcaggcgggctaccgctcgctgatcacggtgctcaccaag
cgcatggcggaggacctgaccgaatatctgcacgagcagggcattcgcgtgcgctacatg
cacagcgatatcgacaccatcgagcgcatcgagatcatccgcgatctgcgtctcggcgcc
ttcgacgcgctggtcggcatcaacctgctgcgcgaaggcctcgacattccggaatgcgcg
ctggtcgccattctcgacgccgacaaggagggctttttgcgcagcgagacctcgctgatc
cagaccatcggccgcgccgcgcgcaacgtcgacggcaaggtgatcctctatgccgaccag
atgacgggctcgatggagcgcgccatcgccgagaccaaccgccgccgcgagaagcaggtc
gagtacaacaccgccaacggcatcacgccggagagcgtgaagaagcagatcggcgacatc
ctcaactccgtctacgagcgcgaccacgtgctggtcgaggtcggcggccacgacatgacc
gacgacgtcatctcgatcggccacaatttcgaggccgtgctcgccgatctggaaacgcgg
atgcgcgaggccgccgcagatctgaacttcgaggaagccgcccgcctgcgcgacgaagtc
aagcgcctgcgtgccaccgagctcgcggtggtcgacgaccccacggtcaagcaacggacc
gtcgcgggcaaggccggcgcctatgccggcaccaagaagtacggcgaggccgcgaacctg
cccgtcagcgcgatgaagaacaagagcgccgcaacggcactcaaggccggcgccggcaag
ggctcacgcgtgcacaagccgcacctcgacgagatgcacggcccggagtcgctgccctat
cgcgagaagcagaccctgccggcgaagccgttcggcgggaacagccggatcatccagccg
acggattcacggcagtcgggcccggagttcgggcctgcgccgaagtcgacgggtgggcag
ccggggcgacggggtgggtggaagaagaggtag
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