Bradyrhizobium sp. NDS-1: RX330_06245
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Entry
RX330_06245 CDS
T11383
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
bran Bradyrhizobium sp. NDS-1
Pathway
bran00220
Arginine biosynthesis
bran00240
Pyrimidine metabolism
bran00250
Alanine, aspartate and glutamate metabolism
bran01100
Metabolic pathways
bran01110
Biosynthesis of secondary metabolites
bran01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
bran00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
RX330_06245 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
RX330_06245 (carB)
00220 Arginine biosynthesis
RX330_06245 (carB)
Enzymes [BR:
bran01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
RX330_06245 (carB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
MGS
CPSase_L_D3
ATP-grasp_3
ATPgrasp_Ter
ATP-grasp
Dala_Dala_lig_C
ATP-grasp_4
CoA_binding_2
MucBP_2
Motif
Other DBs
NCBI-ProteinID:
WOH74721
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Position
complement(1316311..1319775)
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AA seq
1154 aa
AA seq
DB search
MPKRTDITTILIIGAGPIVIGQACEFDYSGTQAVKTLKEEGYRIVLVNSNPATIMTDPEL
ADATYIEPITPEIVAKIIEKERHVIPGGFALLPTMGGQTALNCALSLRRQGTLEKFDVEM
IGATADAIDKAEDRQLFREAMTKIGLETPKSRLANASELKKSFRDKHQAERAKLSGAALD
EHDRQWTLGESERRKRYQEYAFGQAMMALSEIGLPAIIRPSFTMGGTGGGIAYNKEEFLD
IIERGLDASPTNEVLIEESVLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITV
APALTLTDKEYQIMRDASLAVLREIGVETGGSNVQFGVNPEDGRMVVIEMNPRVSRSSAL
ASKATGFPIAKVAAKLAVGYTLDEIANDITGGATPASFEPTIDYVVTKVPRFAFEKFPGA
STTLTTSMKSVGEVMAIGRTFQESLQKALRGLETGLTGLDEIEIEGLGRDDDKNAIRAAL
GTPTPNRLLQVAQAMRLGWSNEDIFNSCKIDPWFLGEMRGIVDMEEKVRRNGLPGNAFGM
HTLKAMGFSDARLAVLAETTEAEVTAKRHALGVRPVYKRIDTCAAEFASPTAYMYSTYEA
PFAGAPADESTPSDKKKVIILGGGPNRIGQGIEFDYCCCHACFALHDAGYESIMVNCNPE
TVSTDYDTADRLYFEPLTAEDVLEIIAKERSKGTLHGVIVQFGGQTPLKLARALEAAEVP
ILGTSPDAIDLAEDRDRFKRVLDKLRLKQPKNGIAYSVEQARLVATDLGLPLVVRPSYVL
GGRAMQIIREENQLSDYLLGTLPELVPADVKARYPNDKTGQINTVLGKNPLLFDRYLSDA
TEIDVDCLCDGKDTFIVGIMEHIEEAGIHSGDSACSLPPHSLEPEMIEELERQTRELALG
LDVVGLMNVQYAIKDGEIYVLEVNPRASRTVPFVAKVVGTPVAKIAARVMAGEKLADFKL
KKAQLKHVGVKESVFPFARFPGVDTVLGPEMRSTGEVMGIDRSFAVAFAKSQLGGGTRVP
RKGTVFVSVRESDKTRIAEAVRELHSLGFKVLATSGTQRFLTDQGIPTEKVNKVLEGRPH
IVDAITNGDVQLVFNTTEGPQALADSRSLRRAALLHKVPYYTTLSGAVAAAQGIRAYLGG
DLEVRTLQSYFSET
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacgtacagacatcaccaccatcctgatcatcggcgccggtcccatcgtgatc
ggacaggcctgcgagttcgactattcgggcacccaggcggtgaagacgctgaaggaagag
ggctatcgcatcgtcctcgtcaattccaacccggccacgatcatgaccgacccggaattg
gccgatgcgacctatatcgagccgatcacgcccgagatcgtcgccaagatcatcgagaag
gaacgtcacgtcattcccggcggcttcgcgctgctgccgaccatgggcggacagaccgcg
ctgaactgcgcgctgtcgctgcgccggcagggcacgctggagaagttcgacgtcgagatg
atcggcgccaccgctgacgccatcgacaaggcggaggaccgccagctcttccgcgaggcc
atgaccaagatcgggctcgagacgccgaagtcgcggctcgccaacgcgtccgagctgaag
aagtcgttccgcgacaagcaccaggccgaacgtgcgaagctgtcgggcgcagctctcgat
gagcacgaccggcagtggacgctgggcgagagcgagcgtcgcaagcgctaccaggaatac
gcgttcggccaggccatgatggcgctgtccgagatcggcctgcccgcgatcatccgcccc
tccttcacgatgggcggcaccggcggcggcatcgcctacaacaaggaagagttcctcgac
atcatcgagcgcggcctcgatgcgtctccgaccaacgaagtgctgatcgaagaatccgtg
ctcggctggaaagagtacgagatggaggtggtgcgcgacaagaaggacaattgcatcatc
gtctgctcgatcgagaacctcgatccgatgggcgtgcacaccggcgattccatcacggtg
gcgccggcgctgacgctgaccgacaaagaataccagatcatgcgcgacgcctcgctggcg
gtgctgcgcgagatcggggtggagaccggcggctccaacgtgcagttcggcgtcaatccc
gaggacggccgcatggtcgtgatcgagatgaatccgcgcgtgtcgcgctcctccgcgctg
gcgtcgaaggccaccggctttccgatcgccaaggtcgccgccaagctcgcggtcggctac
accctggacgagatcgccaacgacatcaccggcggcgccacgccggcctctttcgagccg
accatcgactacgtcgtcaccaaggtgccgcgcttcgccttcgagaaattcccgggcgcc
tcgaccacgttgacgacctcgatgaaatcggtcggcgaagtcatggcgatcggccgcacc
ttccaggagagcctgcagaaggcgctgcgcggactcgagaccggattgaccggcctcgac
gagatcgagatcgaggggctcggtcgcgacgacgacaagaacgcgatccgtgccgcactc
ggcacgccgacgccgaaccggctgctccaggtcgcccaggccatgcggctcggctggtcg
aacgaggacatcttcaactcctgcaagatcgatccgtggttcctgggcgagatgcgcggc
atcgtcgacatggaggagaaggtccgcaggaacggcctgcccggcaacgccttcggcatg
cacaccctcaaggccatgggcttctccgacgcccggctcgcggtgctcgccgagacgacg
gaggccgaggtgaccgcaaagcgccacgcactcggcgttcgcccggtgtacaagcgcatc
gacacctgcgcggccgagttcgcctcgcccaccgcctatatgtattcgacctacgaggcg
ccgtttgcgggcgcgccggcggacgagagcacgccgtccgacaagaagaaggtcatcatt
ctcggcggcggtcccaaccgcatcggccagggcatcgagtttgactattgctgctgccac
gcctgtttcgcgctgcacgatgccggctacgaatccatcatggtcaactgcaatccggag
acggtgtcgaccgactacgacaccgccgaccggctctatttcgagccgctcaccgccgag
gacgtgctggagatcatcgccaaggaacgcagcaagggcacgctgcacggcgtgatcgtg
cagttcggcggccagacaccgctgaagctggcacgcgcgctggaggctgccgaggtgccg
atcctcggcacctcgcctgatgccatcgaccttgccgaggaccgcgaccgtttcaagcgc
gtgctcgacaagctgcggctgaagcagccgaagaacggcattgcctattcggtcgagcag
gcgcgcctggtcgcaaccgatctcggcctgccgctggtggtgcgtccctcctacgtgctc
ggcggccgcgcgatgcagatcatccgcgaggagaaccagctcagcgactatctgctcggc
acgctgccggagctggtgccggcggacgtgaaggcgcgctatccgaacgacaagaccggg
cagatcaacaccgtgctcggcaagaacccgctgctgttcgaccgttatctgtccgatgcc
accgagatcgacgtggattgcctctgcgacggcaaggacaccttcatcgtcggcatcatg
gagcacatcgaggaagccggcatccattccggcgacagcgcctgctcgcttccgccccac
tcgctcgaacctgagatgatcgaggagctggagcggcagacccgcgagctcgcgctcggc
ctcgacgtggtcggcctgatgaacgtgcagtacgccatcaaggatggcgagatctacgtg
ctggaggtcaatccgcgcgcctcgcgcaccgtgcccttcgttgccaaggtggtcggcacg
ccggtcgcgaaaatcgccgcgcgcgtcatggccggcgagaagctcgccgatttcaagctg
aagaaggcgcagctcaagcacgtcggcgtcaaggaatcggtcttcccgttcgcgcgcttc
ccaggcgtcgacacggtgctcggccccgagatgcgctcgaccggcgaggtcatgggcatc
gaccggtcgttcgcggtggcgttcgccaagagccagctcggcggcggcacgcgagtaccg
cgcaagggcacggtgttcgtctcggtgcgcgagagcgacaagacgcgtattgccgaggcg
gttcgcgaattgcattcactcggcttcaaggtgctggcgacctcgggcacccagcgcttc
ctgaccgatcagggcatcccgaccgagaaggtgaacaaggtgctggagggccgtccgcac
atcgtcgatgccatcaccaacggcgacgttcagctcgtcttcaacaccaccgaaggcccg
caggcgctggccgacagccgatcgctgcggcgcgcggccctcttgcataaagtgccgtat
tacaccactctttccggggccgtggcggccgcgcagggcatccgcgcctatcttggcggg
gaccttgaggttcgtaccctgcagagctacttttcggaaacctga
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