Bradyrhizobium sp. NDS-1: RX330_17260
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Entry
RX330_17260 CDS
T11383
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bran Bradyrhizobium sp. NDS-1
Pathway
bran03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bran00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RX330_17260 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bran03019
]
RX330_17260 (rnr)
03016 Transfer RNA biogenesis [BR:
bran03016
]
RX330_17260 (rnr)
Enzymes [BR:
bran01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RX330_17260 (rnr)
Messenger RNA biogenesis [BR:
bran03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RX330_17260 (rnr)
Transfer RNA biogenesis [BR:
bran03016
]
Prokaryotic type
tRNA degradation factors
RX330_17260 (rnr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WOH76746
LinkDB
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Position
complement(3661824..3664181)
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AA seq
785 aa
AA seq
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MKRKNDRGFPDRQAIVAFIKANPGKVGTREIAREFGLKNADRVELKRMLRELADDGTIKK
KRHKVSEPDALPPTLVADITGRDSDGELIASPAEWDEVESGEPPKIRIQMPRRPKPGTVA
GVRDRVLLRVEPSNEAEGPAYLGHVIKVFDKAKSRILGVFRSLPEGGGRLVPVDKKAADR
ELNIAAADTHGAQDGDLVSVDIVRTRSFGLASGRVKEKLGSVKSEKAISLIAIYAHDIPL
QFSPAAEREAEAAEPANLKGREDWRDVPLVTIDPPDAKDHDDAVHAEPDPDPNNKGGFIV
NVAIADVSFYVRPGTALDRDALDRGNSVYFPDRVVPMLPERISNNLCSLVPGEPRGALAV
RMVLGPDGRKRSHSFHRILMRSAAKLSYAQAQAAIDGRPDDATGPLLDPILRPLYAAYAC
AKRARDERDPLNLDLPERKILLKSDGTVDRVVVPERLDAHKLIEEFMILANVAAAEMLEK
KSLPLIYRVHDEPTLEKVHALSEFLETLDIPFTKSGALRPTLFNRVLAQLEGHDYYPLVS
EVVLRAQAQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVVHRALVRALGLGEGALPDS
ESPESLGEVAAHISVTERRAMKAERETVDRLIAHHLADRIGSSFQGRVSGVTRAGLFVKL
AETGADGLIPIRSLGTEYFNYDEGRHALVGTRSGTMYQLGDVVDVRLIEAAPIAGALRFE
LLSSASESAPRGRRPSGPQRRPSFKAHPGRSPDKKRKPAKQKSGKPKKGKGKNKAKGGGK
KGKAW
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcaaaaatgaccgtggctttcccgacaggcaagccatcgtcgccttcatcaag
gcaaatccaggaaaggtcgggactcgcgaaattgcgcgcgagttcggcctgaagaacgcc
gatcgcgtcgagctcaagcgcatgctccgcgagctcgccgacgacgggaccatcaagaaa
aaacgtcacaaggtgtccgagccggacgcgctgccgccgacccttgtcgccgacattacc
ggacgcgactccgacggcgaattgatcgcctcccccgcggaatgggacgaggtcgaaagc
ggcgagccgccgaagatccgcatccagatgccgcgccggccaaagccgggcaccgtcgcc
ggtgttcgcgaccgcgtgctgctgcgcgtcgagccgagcaacgaggccgaaggcccggcc
tatctcggccacgtcatcaaggtcttcgacaaggccaagagccgtatcctcggcgtgttc
cgcagccttcccgaaggcggcggccggctcgtgcccgtcgacaagaaggccgccgaccgc
gaactgaacatcgcggcggccgatacgcacggcgcgcaggacggcgacctcgtcagcgtc
gacatcgtccgcacgcgcagctttgggcttgcgtccggccgggtcaaggagaagctcggc
tcggtcaagtcggagaaggcgatcagcctgatcgcaatctacgcccatgacatccccctg
caattctcacctgccgccgagcgcgaggcggaagccgcagagcccgcgaacctgaagggg
cgcgaggactggcgcgacgtgccgctcgtcaccatcgatccgccggacgcgaaagatcat
gacgacgcggtgcacgccgagcccgatcctgatccgaacaacaaaggcggcttcatcgtc
aacgtcgccatcgccgatgtcagcttctacgtccggccggggaccgcgctcgaccgcgac
gcgctcgaccgcggcaactcggtctacttccccgaccgcgtcgtgccgatgctgcccgag
cgcatctccaacaatctgtgctcgctggtgccgggcgagccgcgcggcgcgctcgcggtg
cggatggtgctcggccccgacggccgcaagcgttcgcacagttttcatcgcatcctgatg
cgctccgccgcaaagctgagctacgcgcaggcgcaggccgcgatcgacggccggccggac
gacgccaccggccccctactcgatccgatcctgcggccgctctatgccgcctatgcctgc
gccaagcgcgcacgcgacgagcgcgatccgctcaatctcgatctgcccgagcgcaagatc
ctcctgaagagcgacggcacggtcgaccgcgtcgtcgtgcctgaaaggctcgacgcgcac
aagctgatcgaggagttcatgatcctcgccaacgtcgccgcggccgagatgctggagaag
aagtcgctcccgctgatctaccgcgtgcacgacgagccgacattggagaaggtccacgcg
ctcagtgaatttcttgaaacgctggacatccccttcaccaaatcaggcgcgctgcgcccc
accctgttcaaccgcgtgctggcccagctcgaaggccatgattattacccgttggtgagc
gaggtggtgctgcgggcccaggcgcaggccgaatattcctccgagaattacggtcatttc
ggcctgaacctgcgccgctacgcgcacttcacctcgccgatccgacgctatgccgacctc
gtcgtgcaccgcgcgctggttcgcgcgctcggcctcggcgaaggcgccctgcccgacagc
gagtcgcctgaaagcctcggcgaggtcgccgcccacatctcggtgacggaacgccgcgcg
atgaaggcggagcgcgagaccgtcgaccgcctgatcgcccaccatctcgccgatcgcatc
ggttcaagcttccagggccgcgtctccggcgtcacgcgcgccggcctgttcgtcaagctt
gccgagaccggcgccgacggcctgatcccgatccgatccctcggcacggaatatttcaac
tatgacgagggccggcacgccctcgtcggcacgcgcagcggcaccatgtatcagctcggc
gacgtggtcgacgtccgcctgatagaagctgctcccatcgcgggcgcgctgcgcttcgag
ctgctgtcgtcggccagtgaaagcgcgccgcgaggccgcaggccatccggcccgcaacgc
cgcccctcgttcaaggcgcatcccggacgcagcccggataaaaaacgcaagccggcaaaa
cagaagtccggcaagccgaagaagggcaaaggaaagaacaaggcaaaaggcgggggtaaa
aagggcaaagcatggtga
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