Bradyrhizobium sp. NDS-1: RX330_18320
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Entry
RX330_18320 CDS
T11383
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bran Bradyrhizobium sp. NDS-1
Pathway
bran03030
DNA replication
bran03430
Mismatch repair
bran03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bran00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RX330_18320 (dnaE)
03430 Mismatch repair
RX330_18320 (dnaE)
03440 Homologous recombination
RX330_18320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bran03032
]
RX330_18320 (dnaE)
03400 DNA repair and recombination proteins [BR:
bran03400
]
RX330_18320 (dnaE)
Enzymes [BR:
bran01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RX330_18320 (dnaE)
DNA replication proteins [BR:
bran03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RX330_18320 (dnaE)
DNA repair and recombination proteins [BR:
bran03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RX330_18320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WOH70268
LinkDB
All DBs
Position
3878222..3881725
Genome browser
AA seq
1167 aa
AA seq
DB search
MPSAGFVHLHVHSAYSLLKGSIKIAKLAELAKKDHQPALALTDTDNLFGALEFSDKMAGS
GIQPIVGCELAVDFGDQDPNARNAMGPSRVVLLAAQERGYRSLMRLNSRAFLESPDSHAP
FVKLDWFDGETEGLIALTGGPDGPVSLALAGGHAELAAQRCERLAGLFGDRLYIELQRHN
TDKERRVESGLIDMAYAKGLPLVATNEPYFASTDDYEAHDALLCIAGGRLIAETEREQLT
PDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAQSSDAAAVE
SAELKRQAEAGLANRLSVHGLSQGTTEEDYNKRLAFELDVIMRMKYAGYFLIVSDFIKWA
KSQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQDRR
GEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV
TLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPLY
RDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRNIHVDLATLPIDDA
ESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKH
GDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRAEMD
KQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHYPVE
FIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGEKTIYYALAALKGVG
IQAIEQIIEERTKRGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLESNRARVFAGA
DSILAACQRAHQAETIGQNDMFGMSADAPTIMLPQIEPWLPAEKLRREYDAVGFFLSGHP
LDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSDPTG
HFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDDAAAKTQKGLRI
FLRDTKPLDSIAKRLANPDIAASNGAAPKIGSPAIAPRSNGDGEVSLVMMLDLETEVEMK
LPGRFKVSPQIAGAIKAVAGVVDVQQI
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgccggatttgttcaccttcacgttcactcggcctattcgctgctcaagggc
tcgatcaagatcgccaagctcgccgagcttgccaagaaggatcaccaaccggccctggcg
ctgacggacaccgacaatctgttcggtgcgctggagttctccgacaagatggcgggctcc
ggtatccagccgatcgtcggctgcgagctggcggtcgatttcggtgatcaggatccgaac
gcgcgcaacgcgatggggccctcgcgcgtggtgctgctggcggcgcaggagcgcggctat
cgcagcctgatgcggctgaactcgcgcgcgttcctcgaatcgccggacagccatgcgccc
ttcgtcaaactcgactggttcgacggggagacagaaggcctgatcgcgctgacgggcgga
ccggacgggccggtctcgctggcgctggccggcggccatgccgaactcgccgcgcagcgc
tgcgagcgtctggccggcctgttcggcgaccgcctctacatcgaattgcagcgccacaac
accgacaaggagcggcgtgtcgaaagcggcctgatcgacatggcctacgccaagggattg
ccgctggttgcgaccaacgagccgtatttcgcctcgaccgacgattacgaagcgcatgac
gcgctgctgtgcatcgccggcggtcggctgatcgccgagaccgagcgggagcagctcacg
cccgatcaccgtttcaagacccgcgccgagatggcggtgctgttcgccgacattccggag
gcgctggcctcgacggtggagatcgccgagcgctgctccttccgccccatgacgcgcaag
ccgatcctgccgttcttcactgtcggcgccgcgcagagctcggacgctgcagcggtcgag
tcggcggaattgaagcgccaggcggaggcggggcttgccaaccgcctcagcgtccacggc
ctgtcccagggcaccacggaagaagactacaacaagcgcctggcgttcgagctcgacgtc
atcatgcgcatgaaatacgcgggctacttcctgatcgtgtccgacttcatcaaatgggcg
aagagccaaggcattccggtcgggccgggccgcggctccggcgcagggtcgctggtcgcc
tgggcgctgaccatcaccgacctcgacccgatcaagttcggcctgctgttcgagcgcttc
ctcaatcccgagcgcgtctcgatgccggacttcgacatcgacttctgccaggatcgccgc
ggcgaagtgatcagttacgtgcagcagcgctacggccgcgaccaggtcgcgcagatcatc
accttcgggacgctgcaggcgcgcggtgtgctgcgcgacgtcggccgcgtcctgcaaatg
ccttacgggcaggtcgacaagctcacaaaactcgtgccgcagaatccggccgcgccggtg
acgctggccgccgcgatcgagagcgagccaaagctccaggcgtttcgcgatgaagatccg
gtggtggcacgcgccttcgacatcgcccagcgcctggaaggcctgacgcgccacgcctcg
acccatgcggccggcatcgtgatcggcgatcgtcccctgagcgagctcgtgccgctctac
cgcgatcccaaatccgacatgccggtgacccagttcaacatgaaatgggtcgagccggcc
ggcctcgtgaagttcgacttccttggcctgaagacgctcaccgtgctcgacgtcgcgtgc
aaactcttgaagccgcgcaacatccatgtcgatcttgcgacgctgccgatcgacgatgcc
gagagctaccagatgctggcccgcggcgaggtggtcggcgtgttccaggttgaaagccag
ggcatgcggcgcgcgctggtcgacatgcgcccggaccgtttcgaggacatcatcgcgctg
gtggcgctgtatcggccgggcccgatggcgaacatcccgacctattgcgcgcgcaagcac
ggcgacgaggagccggaatatctgcatcccgtgctggagccgatcctgaaagagaccttc
ggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgatgtcgggctactcg
ctcggcgacgccgacctcctgcgccgcgccatgggcaagaagatccgcgccgagatggac
aagcagcgcgacatcttcgtcgcaggcgcggtcaagaacggcgtcccgaagggacaggcc
gagaccatcttcgagctgctcgccaagttcgcggactacggcttcaacaagagccacgcg
gcggcctatgcgctggtgtcctaccacaccgcctacatgaaggcgcattatccggtggag
ttcatcgcggcgtcgatgacgctcgatctcaacaacacggacaagctctccgaattccgc
tcggaggcgcagcgcctcggcatcaaggtcgagccgccgaacatcaaccgctccggcgcg
acattcgaggtcggcgagaagacgatctactacgcgctcgcagcgctcaagggcgtcggc
atccaggcgatcgagcagatcatcgaggagcgcaccaagcggggattgttcacctcgctc
gccgactttgccgcacgggtcaatccgcgcgcgatcaacaagcgcatcatcgaaagtctc
gcggccgccggcgccttcgacacgctggagtcgaaccgcgcccgcgtcttcgccggcgcg
gactcgatcctggccgcctgccagcgcgcgcatcaagccgaaaccatcggccagaacgac
atgttcgggatgtcggcggatgcaccgaccatcatgctgccgcagatcgagccgtggctg
ccggccgaaaagctccgccgcgaatacgacgccgtcggcttcttcctgtcgggccatccg
ctcgacgattacgccaccgtgctgaagcggctgcgggtgcagagctgggcggaattctcg
cgcgcggtgaaaaccggcgccaccgccggcaaggtcgcggccaccgtggtctcgcgcatg
gagcggcgcacaaagaccggcaacaagatgggcatcatgggactttcggatcccacgggc
catttcgaggcggtgctgttctccgaaggcctcgcgcaatatcgcgacgtgctggagccg
ggcgccgccgtgctgctgcagctcggcgccgagctccagggcgaagacgtccgcgcccgc
gtgctgcacgccgaaccgctggatgatgccgccgccaagacgcagaaggggctgcgcatc
ttcctgcgcgacaccaagccgctggactcgatcgccaagcgtctggcgaatcccgacatc
gcggcatcgaacggcgccgcgccaaagatcggcagtccggccatcgcgccgcgctccaat
ggcgacggcgaggtctcgctggtgatgatgctcgacctcgagaccgaggtcgagatgaag
ctgcccggccgcttcaaggtctcgccgcagatcgccggcgcgatcaaggcggtcgcgggc
gtagtggacgtgcagcagatctga
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