Bradyrhizobium sp. NDS-1: RX330_32265
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Entry
RX330_32265 CDS
T11383
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bran Bradyrhizobium sp. NDS-1
Pathway
bran03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bran00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RX330_32265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bran03019
]
RX330_32265
Enzymes [BR:
bran01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RX330_32265
Messenger RNA biogenesis [BR:
bran03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RX330_32265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
DUF8086
HEM4
Motif
Other DBs
NCBI-ProteinID:
WOH72898
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All DBs
Position
6913361..6914944
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AA seq
527 aa
AA seq
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MRRAPAFDMERTHLLTSFQDFGLAEPIARALTEENYVTPTPIQAQTVPIALTGRDVVGIA
QTGTGKTASFALPILHRLLENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRALMPGVDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGF
INDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTAERINQRIVQ
VDFSAKPAFLTKLLKDEPVNRALVFTRTKHGADKVVKSLEKAGIPASAIHGNKSQNHRER
TLAQFRSGEIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTARAGADGTAI
SLVAGGEELSYLRDIERLIRVALPREDHRTDAGRRDAGPPPAQQRQGRSGRPGQRPQGAR
HGDGRRSDDRHADGRHHSASRQGDGRPGEGRHGEGRPVDGRPGEGHKASKGSRRRHGSGG
KMNSSPADRSEQRPAHSAGKPDGIQGVAFLRRESRPNGRPNRNPHSN
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgcccgcttttgacatggaaagaacccatcttttgacttcgtttcaggat
ttcggcctcgccgaaccgatcgcgcgtgctctcaccgaagagaactacgtcactcccacc
cccatccaggcccagaccgttccgatcgcactgaccggccgcgacgtcgtcggcatcgcc
cagacgggcaccggcaagacggcgtccttcgcgctgccgattctgcatcgcctgctggag
aaccgcatcaagccgcagcccaagacctgccgggtcctggtgctgtcacccacccgcgag
ctgtcgggccagatcctcgacagcttcaacgcctatggccgccacatccgcctgtcctcg
acgcttgccatcggcggcgtgccgatgggccgtcaggtccgcgctctgatgccgggtgtc
gatgtgctggtggccacccccggccgcctgctcgacctcgtgcagagcaacgggctgaag
ctcggaagcgtcgagttcctcgtgctcgacgaagccgatcgcatgctcgacatgggcttc
atcaacgacatccgcaaaatcgtcgccaagctgccgatcaagcggcagacgctgttcttc
tcggccaccatgccgaaggacatcgccgagctcgccgacgccatgctgcgtgaccccgcc
cgcgtcgcggtgaccccggtctcctcgaccgccgagcggatcaaccagcgcatcgtccag
gtcgacttctccgccaagcccgccttcctgaccaagcttctgaaagacgagccggtcaac
cgcgcactggtcttcacccgcaccaagcacggcgccgacaaggtggtgaagtcgctcgag
aaggccggcatcccggccagcgccatccacggcaacaagtcgcagaaccatcgcgagcgc
acgctcgcccagttccgctcgggcgagatccggaccctggtcgccaccgacattgccgcc
cgcggcatcgacgtcgacggcatcagccacgtcatcaatttcgacctgcccaacgtgccg
gaaacctacgtccatcgcatcggccgcaccgcgcgcgccggggccgacggcaccgcgatc
tcgctggtcgcaggcggcgaggagctcagctatctccgcgacatcgaacggctgatccgc
gtggcgctgccgcgcgaagaccaccgcaccgacgccggccgccgcgatgccggccctccc
ccggcgcagcagcgacagggccggtcaggccgccccggccagcgcccacagggtgcccgg
cacggcgacggacggcgtagcgacgacaggcatgccgacggacgccatcatagcgccagc
aggcagggcgacggacgacccggcgaaggacgccatggcgagggcaggcctgttgatggc
aggcccggtgagggccacaaggcctccaaggggtctcgccgccgccacggttccggtggt
aagatgaactcctcacccgccgatcggtcggaacagcgtcccgcgcatagcgccggcaag
cctgatggaatacaaggcgttgcctttttgcgtcgcgagagtcgccccaacggccggccg
aatcgcaatcctcattcgaactaa
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