Bradyrhizobium sp. RDM4: ACKN7S_27150
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Entry
ACKN7S_27150 CDS
T11586
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
brar Bradyrhizobium sp. RDM4
Pathway
brar03030
DNA replication
brar03430
Mismatch repair
brar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACKN7S_27150 (dnaE)
03430 Mismatch repair
ACKN7S_27150 (dnaE)
03440 Homologous recombination
ACKN7S_27150 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brar03032
]
ACKN7S_27150 (dnaE)
03400 DNA repair and recombination proteins [BR:
brar03400
]
ACKN7S_27150 (dnaE)
Enzymes [BR:
brar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACKN7S_27150 (dnaE)
DNA replication proteins [BR:
brar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACKN7S_27150 (dnaE)
DNA repair and recombination proteins [BR:
brar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACKN7S_27150 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HROB
HHH_3
DUF655
DUF6374
Motif
Other DBs
NCBI-ProteinID:
XLS13794
LinkDB
All DBs
Position
5474370..5477873
Genome browser
AA seq
1167 aa
AA seq
DB search
MPSAGFVHLHVHSAYSLLKGSIKIAKLAELAKKDHQPALALTDTDNMFGALEFSDKMAGS
GIQPIVGCELAIDFGDQDPNARNALLPSRIVLLAAQERGYRSLMRLNSRAFLETPDTHAC
HIKFDWLEGETEGLIALTGGPDGPISLALGAGHPELAAARCERLASLFGDRLYMELQRHG
LDKERRVESGLIDIAFAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAETEREQLT
PDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAASSSDAAAVE
AAELKRQAEEGLANRLRVHGLSQGTTEEDYSQRLAFELDVIMRMKYAGYFLIVSDFIKWA
KGQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQDRR
GEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV
TLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPLY
RDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAIKLLKPRDIHVDLATLPIDDA
ESYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPSYCMRKH
GDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRSEME
KQREIFVAGAVKNGVPKGQADTIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHYPVE
FIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGDKTIYYALAALKGVG
IAAVEQIIAERTRNGLFTSLADFAARVNPRSVNKRVIESLAAAGAFDTLEPNRARVFAGA
DSILAACQRAHQAETIGQNDMFGMSADAPTIMLPQVEPWLPAERLRREYDAIGFFLSGHP
LDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSDPTG
HFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDEAAAKTQKGLRI
FLRDTKPLDSIAKRLAGPEMAGANGAAPRVGSPGIAPRSNGDGEVSLVIMLDLETEVEMK
LPGRFKVSPQIAGAIKAVAGVVDVQQL
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgccggatttgtccaccttcacgttcactcggcctattcgctgctcaagggc
tcgatcaagatcgccaagctcgccgagcttgccaagaaagatcaccagccggccctggcg
ctgaccgacaccgacaacatgttcggagcgctggagttctccgacaagatggcgggctcc
ggcatccagccgatcgtcggctgcgaactcgcgatcgatttcggcgatcaggatccgaat
gcccgcaacgcgctgctgccgtcgcgcatcgtgctgctggcggcgcaagagcgcggctat
cgcagcctgatgcggctgaattcgcgggcgttcctggagacgcccgacacccacgcctgc
cacatcaaattcgactggctcgagggcgagaccgagggcctgatcgcgctgacgggcggt
ccggacgggccgatctcgctggcgctgggcgccggccatcccgagcttgccgccgcgcgc
tgcgagcgtctcgccagcctgttcggcgatcgcctctatatggagttgcagcgtcatggc
ctggacaaggaacggcgggtcgagagcggcctgatcgacatcgcgttcgcaaaaggcctg
ccgctggttgcgaccaacgagccgtatttcgccgcgacggacgactacgaagcgcatgac
gcgcttctttgcatcgccggcggccggctaatcgcggagaccgagcgcgagcagctcacg
cccgatcaccgcttcaagacgcgggccgagatggcggtgctgtttgccgacattccggag
gcgctggcctccaccgtcgagatcgccgaacgctgctcgttccggccgatgacgcgcaag
ccgatcctgccgttcttcaccgtcggcgccgcgtcgagctcggatgcggccgcggtcgag
gcggcggaattgaagcggcaggcggaggaggggctcgccaatcggctgcgcgtgcacggc
ctgtcgcagggcaccaccgaggaggactacagccagcggctggcgttcgagctcgacgtc
atcatgcgcatgaagtacgcgggctacttcctgatcgtgtccgatttcatcaaatgggcc
aagggccagggcataccggtcggaccgggccgcggttcaggcgcgggctcgctggtggcc
tgggcgctgaccatcaccgatctcgacccgatcaagttcgggctgctgttcgagcgcttc
ctcaatccggaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgc
ggcgaggtgatccagtacgtccagcagcgctatggccgcgaccaagtggcgcagatcatc
accttcgggacgctgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtgctgcaaatg
ccttatggccaggtcgacaagctcacaaaactggtgccgcagaatccggccgcgccggtg
acgctggcggccgcgatcgagagcgagccgaagctgcaggcgtttcgcgacgaggacccg
gtggtggcgcgcgccttcgacatcgcgcagcgcctcgaaggcctgacccgccatgcctcg
acccacgcggccggtatcgtcatcggcgatcgcccccttagcgaactggtgccgctctac
cgcgatcccaaatccgacatgccggtgacccagttcaacatgaaatgggtcgagccggcc
ggcctcgtcaaattcgacttcctcggcctgaagacgctgaccgtgctcgacgtcgcgatc
aagctgctcaagccgcgcgacatccacgtcgatctcgccacgttgccgatcgacgatgcc
gagagttatcagatgctggcgcgcggcgacgtggtcggcgtgttccaggttgaaagccag
ggcatgcggcgcgcgctgatcgacatgcgccccgaccgtttcgaggacatcatcgcgctg
gtggcgctgtatcgcccgggtccgatggcgaacatcccgagctattgcatgcgcaagcac
ggcgacgaggagccggaatatctgcatcccgtgctggagccgatcctgaaggagaccttc
ggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgatgtcgggctattcg
ctcggcgacgccgacctgctgcgccgcgccatgggcaagaagatccgctccgagatggag
aagcagcgcgagatcttcgtcgcgggcgcggtgaagaacggcgtgccgaaggggcaggcc
gacacgattttcgagctgttggcgaagttcgccgactacggcttcaacaagagccacgca
gcggcctatgcgctggtgtcctaccacaccgcctacatgaaggcgcattacccggtggag
ttcatcgcggcgtcgatgacgctcgatctcaacaacaccgacaagctctccgaattccgc
tcggaggcgcagcgcctcgggatcaaggtcgagccgccgaacatcaaccgttccggcgcg
accttcgaggtcggcgacaagaccatctattacgcgctcgccgcgctgaagggcgtcggc
attgccgcggtcgagcagatcatcgcggagcggaccaggaacggcctgttcacctcgctg
gccgacttcgccgcacgcgtcaatccgcgatcggtcaacaagcgcgtcatcgaaagcctc
gcggccgccggggccttcgacacgctcgagccgaaccgcgcccgcgtcttcgccggtgcg
gactcgatcctggccgcctgccagcgcgcgcaccaggccgagaccatcggccagaacgac
atgttcggcatgtcggcggacgcgccgaccatcatgctgccgcaggtcgagccctggctg
ccggccgagaggctgcgccgcgaatatgatgcgatcggctttttcctgtcgggccatccg
ctcgacgattacgcgacggtgctgaagcggctgcgggtgcagagctgggcggaattttca
cgcgcggtgaaaaccggcgccaccgccggcaaggtcgcggccaccgtggtgtcgcgcatg
gagcgacgcaccaagaccggcaacaagatgggtatcatggggctgtctgatcccacgggc
cacttcgaggcggtgctgttctcggaagggctcgcccaatatcgcgacgtgctggagcct
ggcgcagccgtgctgctccaactcggcgccgagctccagggcgaggacgttcgcgcccgc
gtgctgcacgccgaaccgctggatgaggccgccgccaagacgcagaagggcctgcgcatc
ttcctgcgcgacaccaagccgctggattcaatcgccaagcgtctggccggccccgagatg
gccggcgcgaacggcgcagcaccgagggtcggcagtcccggcatcgcaccgcgctccaac
ggcgacggcgaggtctcgctggtgatcatgctcgacctcgagaccgaggtggaaatgaag
ctgccaggccgcttcaaggtttcgccgcagatcgccggcgccatcaaggcggtcgcgggc
gtggtggacgtgcagcagctgtag
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