Bradyrhizobium sp. 62B: ML401_14530
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Entry
ML401_14530 CDS
T10244
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bray Bradyrhizobium sp. 62B
Pathway
bray03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bray00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ML401_14530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bray03019
]
ML401_14530
Messenger RNA biogenesis [BR:
bray03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ML401_14530
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
WIW49248
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Position
3317195..3318865
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AA seq
556 aa
AA seq
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MAKPEELVFAPLGGVGEIGMNLSIYGLGNRQQRAWMAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATQFSAALFEAKCAAERNAPKI
PVTVVPSGGRIDVGPFNVEFIPVAHSIPEAHALAIHTSAGTVLHTGDWKIDPTPTLGRPT
DEKRLRELGDEGLLALIGDSTNAVRDGRSPSEAEVARTIIDLVKSAKGRVAVTTFASNVA
RIKAVAAAAKAADREVVVVGRAMERVVQVARETGYLDGVQNFRSPEVYGHLPQDKVLALC
TGSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGSIINNLVLQGVEIIT
DRDALVHVSGHPRRDELRDLIAWTRPQLLIPVHGEALHLHEHAKLARAAGVPRVLVCRNG
DLVKLGPGDPGIVGEVPSGRLYKDGTILEDSKSRAVVERRRMAFSGCAFVAIAMTEQGEL
ADDPEVDLVGIPEKNRAGDPFDDIVFDAVVSTVEGLPKARRRDADALAESVRRAVRAVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccgaggaactggtatttgcgccgctcggcggcgtcggcgagatcggcatg
aacctgtcgatctacggcctcggcaaccgccagcagcgcgcgtggatggcggtcgatctc
ggcgtctccttcggcgacgaggagcatctgcccggcatcgacctgatcatgcccgacatc
tccttcctcgagaaggagcgcaagaacctgatgggcctcgtgctgacccacgcccatgag
gaccatttcggcgccatcatcgatctctggccgaagctgaaatgcccgatctatgcgacg
cagttcagcgccgccttgttcgaggccaaatgcgccgccgagcgcaacgcgccgaagatc
ccggtgacggtggtgccgtcgggcgggcgcatcgacgtcggcccgttcaacgtcgagttc
attcccgtcgcgcattccattccggaagcgcacgcgctggcgatccacacctcggccggc
acggtgctgcacaccggcgactggaagatcgacccgaccccgactttggggcgtccgacc
gacgagaaacggctgcgcgagctcggcgacgagggcctgctcgccctgatcggcgattcc
accaatgcggtgcgcgacggccgctcgccctcggaagccgaggttgcccggaccatcatc
gacctcgtcaaatcggccaagggccgcgttgccgtgaccacgttcgcctccaacgtcgcg
cgcatcaaggccgtcgccgccgctgcgaaagccgccgaccgcgaggtcgtcgtggtcggc
cgcgccatggagcgcgtggtgcaggtcgcgcgcgagaccggctatctcgacggcgtgcag
aatttccgctcgcccgaggtctacggccacctgccgcaggacaaggtgctggcgctgtgc
accggcagccagggcgagccgcgcgccgcgctggcgcgcatcgccaatgacgaccatccc
gagatcacgctcaaccgcggcgacagcgtgatcttctcctcgcgcaccattcccggcaac
gagaaggccgtcggctcgatcatcaacaacctcgtgctgcagggcgtcgagatcatcacc
gaccgcgacgcgctggtccacgtttccggccatccccgccgcgacgaattgcgcgacctg
atcgcctggacccggccgcagctgctgatccccgtccatggcgaggccctgcatctgcac
gagcacgccaagctcgcgcgcgccgccggcgtgccgcgtgtgctggtctgccgcaacggc
gacctcgtcaagctcggccccggcgatcccggcatcgtcggcgaggtcccgtcgggccgt
ctctacaaggacggcacgattttggaggattccaagtcccgcgccgtggtcgagcggcgc
cgcatggcgttttccggctgcgccttcgtcgccattgccatgaccgagcagggcgagctc
gccgacgatcccgaggtcgatctggtcggcatccccgagaagaaccgggccggcgacccc
ttcgacgacatcgtcttcgatgccgtggtctccacagtcgagggcctgccgaaggcgcgc
cgccgcgatgcggatgcgctggctgaatcggtgcgacgcgctgtccgggccgtcatcaac
gaacattggggcaaaaagcccccctgtctggtacacgtactgacagtctaa
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