Bradyrhizobium sp. 62B: ML401_15735
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Entry
ML401_15735 CDS
T10244
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bray Bradyrhizobium sp. 62B
Pathway
bray03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bray00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ML401_15735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bray03400
]
ML401_15735 (mfd)
Enzymes [BR:
bray01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ML401_15735 (mfd)
DNA repair and recombination proteins [BR:
bray03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ML401_15735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WIW49476
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All DBs
Position
3562756..3566274
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLAPGRALTLANVAEGAEGLVISDLARAIAARPKKPAVSLAVVCRDGPRM
QQLERTLQFFAPDLPVLTFPAWDCQPYDRVSPHGGILAQRLTTLARLASLTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRSFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAPIAIEPQAE
DAVRERFKQIQDYYEARREAMEHPGGGAIYKPLPPDRLYLTGEEWTKRESEMPLVRLTQF
SVPTDGTGVVDAGARKGRDFAPERNDTTVNVFEAVVSHVMALHAQRKKVVIALWSEGSRD
RMTSMLRDHKLTHTASVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLAAGDIVVHVDHGIGRFVGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTSVELDRLGGGGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQPGLYDEFCARFPYDETEDQLGAIEATLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLIATKELNLVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPQITIGMPVLIPEDYVGDLSVRLSLYRRLADLDTEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRRANVEKIDAGPKGAVIVFRDNSFAHPDRLVSFIRSYGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagggcatgaaatcgccggccgagctgcttgcgcccggccgggcgctgacgctt
gccaatgtcgcggaaggcgccgaggggctcgtcatctccgatctcgcgcgcgccatcgcg
gcgcggccgaagaagcccgccgtcagcctggcggtggtctgccgcgacggtccgcgcatg
cagcagctcgaacgcacgctgcaattcttcgcgcccgatctgccggtgctgacctttccg
gcctgggactgccaaccctatgaccgcgtctcgccgcatggcggcatcctggcgcaacgc
ctgacgacgctggcacggcttgcgtccctgaccggcagcgacaagccgctgatcgtgctg
accacggtgaacgccgtcgtgcagcgcgtgcccgcgcgcgagctcgtcgcggcgcaggcg
ctgtcggttgcccccggcaatgtcgtgccgatggacaccatcgtcgcctggctggagcac
aacggctacaaccgctcctcgaccgtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctggacctgtttccggcgggcctcgaccagcccgtgcgcttcgacttcttcggcgac
agcctggaatcgatccgcagcttcgatgccgagacccagcgcacgctgctcgatatgcgc
tcgctcgacctcgtgccggtctccgaattccagctcgtcaccgacaccatccgccgtttc
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgatgcgctgtacgaggcc
gtcagcgagggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgg
atggacacgctgttcgactatctgcaaggcgctccgatcgcgatcgagccacaggccgag
gacgccgtccgcgagcgcttcaagcagatccaggactattacgaggcccgccgcgaggcg
atggagcatcccggcggcggcgcgatctacaagccgctgccgcctgatcggctttatctc
accggcgaggaatggaccaagcgcgaaagcgagatgccgctggtgcggctgacgcagttc
tcggttccgactgatgggactggcgtcgtcgacgccggtgcgcgcaagggccgcgacttc
gcgccggagcgcaacgacaccacggtcaacgtgttcgaggccgtcgtcagccacgtcatg
gcgctgcacgcccagcgcaagaaggtcgtgatcgcgctgtggagcgaaggctcgcgcgac
cgcatgacctccatgctgcgcgaccacaagctgacccataccgccagcgtcaactcctgg
cgcacggtgcaggcgaccccgcgcaacgagaccatgctcgccgtgctcggcctcgagagc
ggcttcgagaccgacgagatcgccctcatcagcgagcaggacatcctcggcgaccgcctg
gtgcggccgcgcaaggcaagccgcaagctcgacaatttcatctcggaggtgacgagcctt
gccgccggcgacatcgtcgtccacgtcgatcacggcatcggccgcttcgtcggcctgcag
acgctggacgtcgccggcgcgccacacgactgcctcgagctgcattatgccgccgagaca
aaactgttcctgccggtcgagaacatcgagctgctttcgcgctacggctccgaccagacc
tcggtcgagctggatcgcctggggggcggcggctggcagacccgcaaggcgaagctcaag
aaccgaatccgcgagatcgccggcgaattgatcaagatcgcggccgcgcgccatttgcac
gaggcgcccaagctcccggtgcagcccggcctctacgacgaattctgcgcacgcttcccc
tatgacgagaccgaggaccagctcggggccatcgaagccacgctgaaggacctcgagctc
ggccgtccgatggaccggctgatctgcggcgacgtcggtttcggcaagaccgaggtggcc
ctgcgcgcagcgtttgccgtggcgctcgaaggcaagcaggtcgcggtcgtggtgccgacc
acgctgctcgcgcgccagcacgcaaagacctttaccgagcgcttcaagggctttcccgtg
aacgtggcgcaggcttcgcgcctgatcgcgaccaaggagctcaacctcgtcaagaagggt
atcgctgacggctcggtcgatatcgtcgtcggtactcacgcgctgctcggcaaggccatc
aaattccgcgacctcggcctcgtgatcgtcgacgaggagcagcatttcggcgtcactcac
aaggagcgtctgaaggcgctgcgctccgaggtgcacgtgctgacactgtcggcaacgccg
atcccgcgcacgctgcaactcgcgctgaccggcgtccgcgagctctcgatcatcgcttct
ccgcccgtggaccgccttgcggtgcgcaccttcgtcgctccgcacgacccgctgatgatc
cgcgaggcattgctgcgcgagcgctatcgcggcggccaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgcccgagatgaaggtc
gcggtcgcgcacgggcagatgccgcccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacatcctgttgtcgaccacgatcgtcgagtccggcctcgacatcccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctatcag
ctgcgcggccgggtcggccgctcgaagctgcgtgcctatgcgctgttcacgctgccggcg
cagcagaagatcaccgcgcaggccgagcgccggctcaccgtgctgcaatcgctggagacg
ttgggcgccggcttccagctcgcttcccacgacctcgacatccgcggcgccggcaatctg
ctcggcgaggagcagtccggccacatcaaggaggtcggcttcgagctttatcaatcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtgtccgagcccgccgccgaccgctgg
tcgccacagatcaccatcgggatgcccgtgctcattcccgaggactatgtcggcgatctc
tcggtgcggctgtcgctgtaccggcggcttgccgatctcgacaccgaggaggagatcgag
aactttggcgccgagatgcgcgatcgcttcggcgttctgcccgacgaggtgcgctacctg
ttcaaggtcgccgcgatcaaggcgttctgccgcagggccaatgtcgagaagatcgacgcc
ggcccgaagggcgccgtcatcgtcttccgcgacaattccttcgcccatcccgatcgcctg
gtgagcttcatccgcagctacggccaggccgccaaggtgcgccccgacatgaaggtggtg
tttttgcaggactgggagacaccggaggagcggcttgccggcacgacggagatcatgcgg
cagctggcgcagctcgcggagagcaagaaggcggcgtga
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