Bradyrhizobium sp. 62B: ML401_20060
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Entry
ML401_20060 CDS
T10244
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bray Bradyrhizobium sp. 62B
Pathway
bray03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bray00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ML401_20060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bray03021
]
ML401_20060 (rpoC)
03400 DNA repair and recombination proteins [BR:
bray03400
]
ML401_20060 (rpoC)
Enzymes [BR:
bray01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ML401_20060 (rpoC)
Transcription machinery [BR:
bray03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ML401_20060 (rpoC)
DNA repair and recombination proteins [BR:
bray03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ML401_20060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
WIW43817
LinkDB
All DBs
Position
complement(4443302..4447498)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLEASLRVEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
AKVIHLHTKIKYRWQGMDETGKVSTRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHGKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDIRDSSGKVIIKRDTLMEESHLDAIQQGGVQEVKIRSALTCELVNGICGKCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVEANFDGKIVIRNKAIA
RNSEGHLIAMVRNMVVAIVDADGTERATHRVQYGSRLHVDEGDMVKRGQRIVEWDPYTRP
LLTEVEGTIGFEDLVEGQSISETLDEATGIAKRVVIDWRSTRGGSDLRPAIVVKGKDGKV
LKLARGGDARYMLSVDAILSVDVGAKVNPGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTDEPREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQVDKIEFDALNEKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDKLILDEREKQA
AVVSPAPEAELPALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaacccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtctccagagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgccgcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggccttctgctggacatgacgctgaaggatctcgagcggatcctc
tacttcgaatactacgtcgtgctcgagccgggtctcaccgcgctcaaggaccgtcagctg
ctgtcggaggacgagtatctgaaggcgcaggacgagtatggccaggattccttcaccgcc
atgatcggcgccgaagcgatccgcgagctgctcaagggcatggacctcgagaagctcgag
gcctcgcttcgcgtcgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtggaagcgttccgccactccggcaacaagccggaatggatgatc
atgaccgtggtcccggtgatcccgccggacctgcgtccgctggtgccgctggacggcggc
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagctgcgcgcgcccgacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgtttgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctattcgcggctcgacgccaagggcctgtccaccaccgtgaagcaggccaag
aagctggtcgagaaggagcggcccgaggtctgggacatcctggatgaggtgatccgcgag
catccggtgctgctgaaccgcgcaccgacgctgcatcgcctcggcatccaggcgttcgag
cccgtgctgatcgaaggcaaggcgatccagcttcacccgctggtctgctcggcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggccaacggtcagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgcgctgcat
gcgaaggtcatccacctccacaccaagatcaagtaccggtggcagggcatggacgagacc
ggcaaggtctcgacgcgctggatcgagaccaccgccggccgcgtcatgctcggcaatctc
ctgccgaagaacccgcggatttcgtacgagatcatcaacaagctgatgaccaagcgcgag
atctcgggcgtgatcgaccaggtctaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgcacggcaagtggaagatcgtcgacaccacccgtacgctg
gcgaaggatttcgaacagcagtacaacgacggtctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctcctcgaccaagaagacggcgagcggggcggatgccgacatcaactcgatctacatg
atggctcactccggtgcccgcggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggttctcgagtacttcaactcgacccacggtgcccgtaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgccgtctggtcgacgtcgcg
caggactgcatcatcacgcagagcgactgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggtggcttcgctcggctcgcgcatcctcggacgcacggcc
tgcgaggacatccgcgacagctccggcaaggtgatcatcaagcgcgacacgctgatggaa
gagagccatctggacgccatccagcagggtggtgtgcaggaggtgaagatccgctcggcg
ctgacctgcgaactcgtcaacggcatctgcggcaagtgctacggccgcgacctcgcccgc
ggcacgccggtcaaccacggtgaagccgtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggtgcggcgcagctcaacgag
cagtccttcgtcgaagccaatttcgacggcaagatcgtgatccggaacaaggccatcgcc
cgcaacagcgaaggtcacctgatcgcgatggtgcgcaacatggtggtggcgatcgtcgat
gccgacggcaccgagcgcgcgacgcaccgcgtccagtacggctcgcgcctgcacgtcgac
gagggggacatggtcaagcgcggccagcgcatcgtcgagtgggatccctacacccgtccg
ctcctcaccgaagtcgaaggtaccatcggcttcgaggatctggtcgaggggcagtcgatc
tcggaaacgctcgacgaagcgaccggtatcgccaagcgcgtggtcatcgactggcgctcg
acccgcggcggctcggacctgcgtccggccatcgtggtcaagggcaaggacggcaaggtg
ctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgacgccattctctcg
gtcgacgtcggagccaaggtcaatccgggcgacattctcgcccgtgtctcgaccgaaagc
gccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggctcgg
cgtccgaaggatgcggcgatcatcgccgagatcgcgggcaccatccggttcgggcgcgac
tacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgacgagccgcgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgatgtcgtcgaaaagggc
gacttcatcgtcgaaggcaacccggcaccgcacgacattcttgcggtcaagggcatcgag
gagctcgcggcctatctggtcaacgagatccaggaggtctaccggctccagggcgtgctc
atcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgatacggacatgatctcgggcgagcaggtcgacaagatcgagttcgacgcg
ctgaacgagaaggccaaggaagagggcaagaagcccgccacgggaacgccggttctgctc
ggcatcaccaaggcgagcctccagacccgttcgttcttctcggcggcctcgttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaaggtcgatccgctcgaaggcctc
aaggagaacgtcatcgtcggccgtctgattccggcgggcaccggcgcctccatggccaag
atccgcgaagtcgccatgaagcgcgacaagctgatcctggacgagcgcgagaagcaggcg
gccgtcgtgtcgcccgcgcccgaagccgagcttcctgcgctgccgcccgcggaatga
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