Bradyrhizobium sp. C-145: LRP30_17615
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Entry
LRP30_17615 CDS
T09672
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
braz
Bradyrhizobium sp. C-145
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
braz03016
]
LRP30_17615
Enzymes [BR:
braz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LRP30_17615
Transfer RNA biogenesis [BR:
braz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LRP30_17615
Prokaryotic type
tRNA splicing ligases
LRP30_17615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
HTH_17
Motif
Other DBs
NCBI-ProteinID:
UQR66955
LinkDB
All DBs
Position
complement(3817421..3818761)
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AA seq
446 aa
AA seq
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MRRSDPYMERARELCLAAGIDPDSRVGEGRGQPAWCSYRDAARKEHLAREANTAASEIAN
LRPQEARFQNAPLKIFGPHEEATVAQMRNCMAVGNVVSGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNLAARLDTRFDDIANIVPTIMRDVAKTISFGVGRANAERAEHELF
DDSDAWRESDMEAYRQKAMSQLGTVGSGNHYVDLMRDEEGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPTVIDEESELGRRYIAAMHLAGRYAYAGREWVVERVRQIIGGSVTE
SVHNHHNYAWRETHEGKDLWVVRKGATPAFPGQKGFVGGSMGDDAVILEGVDSPEAKASL
YSTVHGAGRLFGRREAKRRFSRAEMDRWLSERGVTLVGADLDESPMAYRRLPDVLAQHAG
TVRVLHTLRPFAVAMAGEGEFDPWKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgatccgatccctacatggaacgcgcccgcgagctctgcctcgccgccggcatc
gatcccgactcgcgcgtcggcgaaggacgcggccagccggcctggtgctcgtaccgggac
gccgcgcgcaaggaacatctcgcccgcgaggccaacaccgccgcaagcgagatcgcgaac
ctgcgtccgcaggaggcgcgcttccagaacgcgccgctgaagatcttcggcccgcatgag
gaggcgaccgtggcgcagatgcgcaactgcatggcggtcggcaatgtcgtatccggcgtg
atctgcgccgatggccatctcggctacgcccagccggtcggcggggtcatcgcctacgag
aagcagatcagcatctccggcgtcggcttcgacatcggctgcggcaacttggccgcaagg
ctcgacacccgcttcgacgacatcgccaacatcgtgcccacgatcatgcgcgacgtcgcc
aagacgatctcgttcggtgtcggccgcgccaatgccgagcgggccgagcacgagctgttc
gacgacagcgatgcctggcgcgagagcgacatggaggcctaccgtcagaaagcgatgagc
cagctcggcacggtcggatcgggcaaccactatgtcgacctcatgcgtgacgaggaaggc
tttgtctggatcggcgtccatttcggaagccgcggcctcggacacacctccgcgacgcgc
tatctcaaggccgccggcggcaaggatggcatgaacgtcccgcccaccgtgatcgacgag
gagtccgagctcggccgccgctacatcgcggcgatgcatctcgccggacgttacgcctat
gcgggtcgcgagtgggtcgtcgagcgggtccgccagatcatcggcggcagcgtgaccgag
agcgtgcacaaccaccacaactatgcctggcgtgagacccacgagggcaaggatctgtgg
gtggtgcgcaagggcgcgacgccggcgtttcccggccagaagggattcgtcggcggctcg
atgggcgacgatgccgtcatcctcgaaggcgtcgacagtccggaggccaaggcttcgctg
tactcgaccgtgcacggcgccggccgcctgttcggacgacgggaggcgaagcggcgcttc
tcgcgcgcggaaatggaccgctggctgagcgagcgcggcgtcaccctagttggtgccgac
ctcgacgagagcccgatggcctatcgccgcctgccggacgtgctggcgcagcacgccggc
accgtgcgggtgctgcacacgctgcggccgttcgccgtcgccatggccggcgaaggcgag
ttcgatccgtggaaggactga
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