Bradyrhizobium sp. C-145: LRP30_18965
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Entry
LRP30_18965 CDS
T09672
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
braz
Bradyrhizobium sp. C-145
Pathway
braz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRP30_18965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
braz03019
]
LRP30_18965
03009 Ribosome biogenesis [BR:
braz03009
]
LRP30_18965
Enzymes [BR:
braz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LRP30_18965
Messenger RNA biogenesis [BR:
braz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRP30_18965
Ribosome biogenesis [BR:
braz03009
]
Prokaryotic type
rRNA processing factors
LRP30_18965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
UQR67209
LinkDB
All DBs
Position
complement(4077601..4080675)
Genome browser
AA seq
1024 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNAR
RRGHGERVRSDIVEGLEAGADPAAQPVEGDVLPAQTEGASHEGEHLHADAEHHGEYDGHD
HHEDDHGDHQPHDDDHQHAHADDDQGDHGEHDHHDHDQADETPAPVAAVGAEPVVAAETI
AEPQEAVAPEAHAEAFAEAVAVAAEPADAVYAADAAHAKAAEVTADEEDEDGDGEEAEEE
LVESVGGDDVLEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLA
GRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKR
DFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGESGYREARD
FMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSID
VNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKL
SDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRSVSSVALQL
LRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLSVIADQSVSGPQA
YVIDRGEQVHTLEAAKALLAAQAAASPPPLVEDAYEDEEFDAELESEIESEETEGLAEEQ
AAGEAAPEQDGQRRKRRRRRRGRGGQRDGELREDNAPTEAAMAAGEGEEDSESEQDGEEG
EEQAARGEQQGGGERRRRRGRRGGRRRRGGAEEGLAGSIGDELAANAPPEATDAVADFDS
FGNEAAPSIAQAEHIAEPQAAQPEPRADVPSEAPARPEPAPVTATAAPVEEPADDKAARR
RSTVREKVSFLLHSQPEPATPVAQPTEPVAAPAPAAEPAPQAANEPPAAPRRAGWWSRRF
GGGE
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcacaacgcaagcaactgcgcggg
aatatctacctcgccaaggtcaccagggtcgaaccctcgctccaagccgctttcgtcgaa
tatggcggcaaccgccacggcttcctcgcattcagcgaaatccatcccgattactaccag
atcccggtcgccgaccggcaggcgctgatcgaggccgaggaacaggctcatcgcgaggcc
gaggaagagagcgagaaccgctcccacggccgccgccgctcgcgccaccgcaacgcccgt
cgccgcggccacggcgaacgcgtccgcagcgacatcgtcgaaggcctcgaggccggcgcc
gatcccgcggcccagccggtcgagggcgacgtcctgccggcgcagactgaaggcgcttcg
cacgaaggcgagcacctgcacgccgatgccgagcatcatggcgagtacgacggccacgat
catcacgaagacgatcatggcgatcatcagccccatgatgacgatcaccaacacgcccac
gctgatgacgaccagggtgatcacggcgagcacgatcatcacgaccatgatcaagccgac
gagacgcccgcgcctgtcgcggccgtcggcgccgagcccgtggttgcggccgagaccatt
gccgagccgcaggaggccgttgcccccgaagcccacgccgaggctttcgccgaagcggta
gctgtcgccgctgaaccagccgatgccgtttacgccgccgacgcggcgcatgccaaggcc
gcggaagtgacggctgacgaagaggacgaggacggggacggcgaggaagccgaagaggag
ctcgtcgaatccgtcggcggcgacgacgtgctggaggaagtgccggagcgcaccttccgc
ccgcgccgccagtacaagatccaggaagtcatcaagcgccgccaggtgatgctggtgcag
gtcgtcaaggaagagcgcggcaacaagggcgccgcgctgacgacctatctgtcgctcgcc
ggccgctatgccgtcttgatgcccaacactgcgcgcggcggcggcatcagccgcaagatt
accagcgcccaggaccggtcccgcctgaaggaagtggtgcaggatctcgacgtgcccgag
ggcatgggcatcatcctgcgcaccgccggcgctgcccgcaccaagcccgagatcaagcgc
gacttcgaatatctgatccggatgtgggagacggtgcgcgacctgacgctgaagtcgcag
gccccgaccctcgtctacgaggaaggctcgctgatcaagcgctcgctgcgcgacctctac
aacaaggagatcgacgagatccaggtggccggcgaatccggctaccgcgaagcgcgcgac
ttcatgaagatgctgatgcccgccaatgtcagcgcggtgaagcagtatcgcgacggccag
ccgctattctcgcggatgggtgtcgagagccagctcgatgcgatgttctcgccgaccgta
cagcttcgctccggcggctacatcgtcatcaaccagaccgaagcgctggtctcgatcgac
gtcaactcgggacgatcgacccgcgagcaccatatcgaggacaccgcgctcaagaccaat
ctggaggcggccgaagaggtcgcccgtcagctccgcctgcgcgacctcgccggcctgatc
gtcatcgacttcatcgacatggacgagaagcgcaacaaccgtgcggtcgagcgcaagctg
tccgattgcctcaggcaggatcgcgcgcgcatccaggtcggacgcatctcgcatttcggc
ctgctggaaatgtcgcgccagcgcattcgcgccagcgtgctggagagttcgaccgatccc
tgcccgcattgcggcggcaccggtcatgtccgctcggtctcctcggtggcgctccagttg
ctgcgcggcctcgaagagatcctgatgaagggcgcgacccacaatctcgtggtccgcacc
cgcaccgacgtcgcgctctacgtgctgaaccacaagcgcggtcatctgcgtgatctcgag
aacggcttcaaggtcacgctgtcggtcatcgccgatcagtccgtcagcggacctcaggct
tacgttatcgaccgtggcgagcaggtgcatacgctggaagctgccaaggcgctgcttgcg
gcgcaggcggctgcgagcccgccgcccctggtcgaagacgcctatgaggacgaggagttc
gatgcggagctggaatccgagatcgagtccgaggagaccgaaggtctcgccgaggagcag
gccgccggtgaggcagcccccgaacaggacggccagcgccgcaagcgccgccgccgccgc
cgcggccgtggcggccaacgcgacggcgagttgcgcgaggataacgcccccacggaggcc
gctatggcagccggcgaaggcgaagaggattcagagtccgagcaggatggcgaggaaggc
gaggaacaggccgcccgcggcgagcagcagggcggcggtgagcgccggcgtcggcgtggt
cgccgcggcggacgccgtcggcgcggtggcgccgaggaaggtctcgccggctccatcggc
gacgagctcgctgccaatgcgccgccggaggcgaccgacgcagtcgccgatttcgacagc
tttggcaacgaggccgcgccctcgattgcacaggccgaacacatcgccgaaccacaggcg
gcgcagcctgaaccgcgcgccgacgtgccgagtgaggcgccggcccggccggagccggct
cccgtcacggcgaccgcagcgccggtcgaagagcccgccgacgacaaggccgcgcgacgc
cgctccaccgtccgggaaaaggtgagcttcctgctacacagccagcccgaacccgcgaca
ccggttgcgcagccgaccgaaccggttgcagcgcccgcgccagcagctgagcccgcaccg
caagccgcaaacgaacctccggcagccccgcgccgtgccggttggtggtcgcgccgcttc
ggtggcggcgaataa
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