Bradyrhizobium sp. C-145: LRP30_24405
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Entry
LRP30_24405 CDS
T09672
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
braz
Bradyrhizobium sp. C-145
Pathway
braz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRP30_24405 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
braz03021
]
LRP30_24405 (rpoC)
03400 DNA repair and recombination proteins [BR:
braz03400
]
LRP30_24405 (rpoC)
Enzymes [BR:
braz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRP30_24405 (rpoC)
Transcription machinery [BR:
braz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRP30_24405 (rpoC)
DNA repair and recombination proteins [BR:
braz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRP30_24405 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
UQR60173
UniProt:
A0AB38S4I9
LinkDB
All DBs
Position
complement(5191612..5195808)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLEASLRVEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKVFGDMAELEHALH
AKVIHLHTKIKYRWEGMDETGKVSKRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHGKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISATKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDVRDSSGKVIIKRDTLMEESHLDAIQQGGVQEVKIRSALTCELVNGICGKCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVEANFDGKIVIRNKAIA
RNSEGHLIAMVRNMVVAIVDADGTERATHRVQYGSRLHVDEGDMVKRGQRVVEWDPYTRP
LLTEVEGTIGFEDLVEGQSISETLDEATGIAKRVVIDWRSTRGGSDLRPAIVVKGKDGKV
LKLPRGGDARYMLSVDAILSVDVGAKVNPGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQVDKIEFDALNEKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDKLILDEREKQA
AVVSPAPEAEPMALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtctccagaaaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgtaccttcaagcccgagcgcgacgggctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcagcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgctggacatgacgctgaaggatctcgagcggatcctc
tatttcgaatactacgtcgtgctggagccgggcctcaccgcgctgaaggaccgtcagctc
ctgtctgaagacgagtatctgaaggcgcaggacgagtacggccaggattccttcaccgcc
atgatcggcgcggaagcgatccgcgagctgctcaagggcatggacctggagaagctcgag
gcctccttgcgcgtcgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtggaagcgttccgccactccggcaacaagccggaatggatgatc
atgaccgtggtcccggtgatcccgccggacctgcgtccgctggtgccgctggacggcggc
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgtctgcatcaatgcggcctgccgaagaagatggcgctggaactgttcaag
ccgttcatctactcgcggcttgacgccaagggcctgtccaccaccgtgaagcaggccaag
aagctggtcgagaaggagcgtcccgaggtctgggacatcctggatgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctcggcatccaggcgttcgag
cccgtgctgatcgagggcaaggcgatccagctgcacccgctggtctgctccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgcttgaagcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggtcagccg
atcatcgtgccgtcgcaggacatcgtgctgggtctgtactacgtctcgatcatgcgtgaa
ggcctgcccggtgagggcaaggtgttcggcgacatggccgagctcgagcacgcgctgcac
gcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcatggacgagacc
ggcaaggtctccaagcgctggatcgagaccaccgccggccgcgtcatgctgggcaatctg
ctgccgaagaacccgcggatttcgtacgagatcatcaacaagctgatgaccaagcgcgag
atctcgggcgtgatcgaccaggtctaccgtcattgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgcacggcaagtggaagatcgtcgataccacccgtacgctg
gcgaaggatttcgaacagcagtacaacgacggtctgatcacgcatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctccgccactaagaagacggcgagcggagccgacgccgacatcaactcgatctacatg
atggctcactccggtgcccgcggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactccggctacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcatcacgcagagcgactgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtcgttgcttcgcttggttcgcgcatcctcggacgcacggcc
tgcgaagacgtgcgtgacagctcgggcaaggtgatcatcaagcgcgacacgctgatggaa
gagagccatctggacgccatccagcagggtggcgtgcaggaggttaagatccgctcggca
ctgacctgcgagctcgtcaacggcatctgcggcaagtgctacggccgcgacctcgcccgc
ggcacgccggtcaaccacggcgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggtgcggcgcagctcaacgag
cagtccttcgtcgaagccaacttcgacggcaagatcgtgatcaggaacaaggccatcgcc
cgcaacagcgaaggtcatctgatcgcgatggtgcgcaacatggtggtggcgatcgtcgat
gccgacggcaccgagcgtgcgacgcaccgtgtccagtacggctcgcgcctgcacgtggac
gaaggcgatatggttaagcgcggccagcgcgtcgtcgagtgggatccctatacccgtccg
ctcctcaccgaagtcgaaggtacgatcggcttcgaggatctggtcgaggggcaatcgatc
tcggaaacgctcgacgaggccaccggtatcgccaagcgcgtggttatcgactggcgctcg
acccgcggcggctcggacctgcgtccggccatcgtggtcaagggcaaggacggcaaggtg
ctcaagctcccccgtggcggcgatgcccgctacatgctgtcggtcgacgccattctctcg
gtcgacgtcggagccaaggtcaatccgggcgacatcctcgcccgtgtctcgaccgaaagc
gccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcacgg
cgtccgaaggatgcggcgatcatcgccgaaatcgcgggcaccatccggttcggacgcgac
tacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgaggagccgcgcgag
tacctgatcccgaagggcaagcatatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtggaaggcaacccggcgccgcacgacattcttgcggtgaagggcatcgag
gagcttgcggcttacctggtcaacgaaatccaggaggtctaccggctccagggcgtgctc
atcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacacggacatgatctccggcgagcaggtcgacaagatcgagttcgacgcg
ctgaacgagaaggccaaggaagagggcaagaagcccgccacggggacgccggttctgctc
ggcatcaccaaggcgagcctccagacccgctcgttcttctcggcggcctcgttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaagatcgatccgctcgaaggcctc
aaggagaacgtcatcgtcggccggctgatcccggcgggcaccggcgcctccatggccaag
atccgcgaagtcgccatgaagcgcgacaagctgatcctggacgagcgcgagaagcaggcg
gccgtcgtatcgcccgcgccggaagcggagccaatggcgctgccgccggctgaatga
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integrated database retrieval system
