Bradyrhizobium sp. C-145: LRP30_39080
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Entry
LRP30_39080 CDS
T09672
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
braz
Bradyrhizobium sp. C-145
Pathway
braz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRP30_39080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
braz03019
]
LRP30_39080
Enzymes [BR:
braz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRP30_39080
Messenger RNA biogenesis [BR:
braz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRP30_39080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
DUF8086
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UQR62681
LinkDB
All DBs
Position
8306543..8308066
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AA seq
507 aa
AA seq
DB search
MRRAPAFDMESTPLLTSFQDFGLAEPIARALREENYVTPTPIQAQTIPLALTGRDVVGIA
QTGTGKTASFALPILHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRSLMPGVEVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGF
INDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTAERINQRILQ
VDFSAKPAFLTKLLKDEPINRALVFTRTKHGADKVVKTLAKAGIAANAIHGNKSQNHRER
TLAQFRSGEIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTARAGADGTAI
SLVAGGEELSYLRDIERLIRVALPREDHRTDAGREAAQAPAAAQHRSGRPGRPSQRPHGA
RHADGRHGEGRHVEGRPVDGRSGESHNTSKGSRRRRHSGGKMNSSPADRSEQRPAHSAGK
PDGIQGVAFLRRESRPNGRPNRNPHSH
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgcccgcttttgacatggaaagtacccctcttttgacttcgtttcaggat
ttcggcctcgccgaacccatcgcgcgcgctcttcgtgaagagaactacgtcacccccacc
ccgatccaggcccagaccatcccgctggcgctgaccggccgcgacgtcgtcggcatcgcc
cagaccggcaccggcaagaccgcgtccttcgcgctgccgatcctgcatcgcctgctcgag
aaccgcatcaagccgcagcccaagacggcccgtgtgctggtgctgtcgcccacccgcgaa
ctgtccggccagatcctcgacagcttcaacgcctatggccgccacatccgcctgtcctcg
acactcgccatcggcggcgtgccgatgggccgccaggtccggtcgctgatgcccggcgtc
gaggttctggtcgccacccccggccgcctgctcgatctcgtgcagagcaacggtctgaag
ctctcgagcgttgagttcctcgtgctcgacgaggccgaccgcatgctcgacatgggcttc
atcaacgatatccgcaaaatcgtcgccaagctgccgatcaagcgccagacgctgttcttc
tcggccaccatgccgaaggacatcgccgagctcgccgatgccatgctgcgtgatcccgcc
cgcgtcgcggtgaccccggtctcctccaccgccgagcggatcaaccagcgcatcctccag
gtcgatttctcggccaagcccgccttcctcaccaagctgctgaaggacgagccgatcaac
cgcgcgctggtcttcacccgcaccaagcacggcgccgacaaggtggtgaagacgctggcc
aaggcgggcatcgcggccaacgccatccacggcaacaagtcgcagaaccatcgcgagcgc
acgctcgcccagttccgctcgggcgagatccgcactctggtcgccaccgacatcgccgcc
cgcggcatcgacgtcgacggcatcagccacgtcatcaatttcgatctgcccaacgtgccc
gagacctatgtccaccgcatcggccgcaccgcgcgcgccggcgccgacggcaccgcgatc
tcgctcgtggccggcggcgaggagctcagctatctccgcgatatcgagcgcctgatccgc
gtggcgctgccgcgcgaggatcaccgcaccgacgccggccgcgaggccgcccaggcgcct
gctgctgcgcagcatcgctcgggccggccaggccgtcccagccagcgcccgcacggcgca
agacatgctgatggacggcatggcgaaggacggcatgtcgagggccggcctgttgatggc
aggtccggtgagagccacaacacgtcgaaggggtctcgccgccgccgccattccggtggt
aagatgaattcctcaccagccgatcggtcggaacagcgtcccgcgcatagcgccggcaag
cctgatggaatacaaggcgttgcctttttgcgtcgcgagagtcgtcccaacggccgaccg
aatcgcaatcctcattcgcactag
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