Brenneria rubrifaciens: EH207_02295
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Entry
EH207_02295 CDS
T05976
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
brb
Brenneria rubrifaciens
Pathway
brb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
brb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EH207_02295 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brb03021
]
EH207_02295 (rpoD)
Transcription machinery [BR:
brb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EH207_02295 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Eclosion
Motif
Other DBs
NCBI-ProteinID:
QCR07480
UniProt:
A0A4P8QQJ1
LinkDB
All DBs
Position
complement(475233..477065)
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AA seq
610 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSSEEMDNDDDEEDDDTEDDNSIDPELAREKFTELRQQYETTRQIIKAYGRNHA
KAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIMKLCVEQCKMPKKNFV
TLFSGNETDESWFAAAIAMAKPWSEKLHDVEDDIKRNLQKLRQIEEETGLTIEQVKDINR
RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL
AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSA
THDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SEVLRSFLDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctaaagctgcttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactccgaccag
atcgaagacatcatccagatgattaatgacatgggcatccaggtgatggaagaagcaccg
gatgcggatgatctgttgctggcagaaaacaccaatgacgcagatgaagatgcggcagag
gctgctgctcaagtgttatccagcgttgaatcggaaatcggccgcaccaccgatccggtg
cgcatgtacatgcgtgaaatgggtacggttgaactgttgacgcgtgaaggcgagatcgat
attgccaagcgcatcgaagatggtatcaatcaggttcagtgttccgttgctgagtatcca
gaagcgattacctacctgctggaacaatatgatcgtgtcgaagcgggtgaaagccgcctg
tcagacctgattaccggatttgtcgatccgaatgcggaagaagatatcgcgcctactgcg
actcatgtcggctctgagctttcgagcgaagaaatggacaatgacgatgatgaggaagat
gacgataccgaagacgataacagcatcgatcctgagctggcccgtgagaaatttacggaa
ttgcgtcagcaatatgaaacgacccgtcagatcatcaaagcctatggccgtaatcatgca
aaagcggcacaagagattctgaatctttcggaagttttcaagcagttccgtttagttcct
aaacagtttgatttcctggttaacagcatgcgttccatgatggatcgcgtacgaactcag
gaacgtctgatcatgaagctgtgcgttgaacaatgcaaaatgccgaagaaaaacttcgtc
acattgttctccggcaatgaaaccgatgaaagttggttcgccgccgcgattgccatggca
aaaccctggtcagagaaactgcatgatgtagaagacgacatcaagcgcaacttgcaaaaa
ctgcgtcagatcgaagaagaaaccggcttgaccattgagcaggtcaaggacatcaaccgt
cgtatgtcgattggtgaagcaaaagcccgccgcgcgaaaaaagagatggttgaagcaaac
ttgcgtctggtcatttctatcgccaagaaatacaccaaccgcggcttgcagttccttgat
ttaattcaggagggtaacatcggtctgatgaaagcggtagacaagtttgaataccgtcgt
ggttataaattctcgacgtatgcgacctggtggattcgtcaggcgattacgcgttctatc
gccgatcaagctcgtaccatccgtattccggtgcacatgattgagactatcaacaagctc
aaccgtatttcacgccagatgcttcaggaaatgggccgtgaaccgacgccggaagaactg
gctgaacgcatgctgatgccggaagacaagatccgtaaagtgctgaagatcgctaaagaa
ccgatttcgatggaaacgccgattggtgatgatgaagattcacatttaggcgactttatc
gaagatacgacgctggagttaccgctggattccgccacttcggaaagcctgcgttctgca
acacacgacgtactggcggggctgaccgcgcgtgaagcgaaagtactgcgcatgcgtttc
ggtatcgatatgaataccgatcacacgctggaagaagtgggtaaacagtttgacgtaaca
cgtgagcgtattcgtcagatcgaagccaaagcgttgcgtaaactgcgtcacccaagccgt
tccgaagtactgcgcagcttcctggatgattaa
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