Brenneria rubrifaciens: EH207_07165
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Entry
EH207_07165 CDS
T05976
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brb
Brenneria rubrifaciens
Pathway
brb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EH207_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brb03019
]
EH207_07165
03009 Ribosome biogenesis [BR:
brb03009
]
EH207_07165
Enzymes [BR:
brb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EH207_07165
Messenger RNA biogenesis [BR:
brb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EH207_07165
Ribosome biogenesis [BR:
brb03009
]
Prokaryotic type
rRNA processing factors
EH207_07165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QCR08309
UniProt:
A0A4P8QRZ8
LinkDB
All DBs
Position
complement(1521754..1524999)
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AA seq
1081 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVNAIEMRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKTTLSYLLPQRLETETQQLQEEQTVERKQPEQPALATFTMTDMPVA
EEETESVVTKTAPAVKPATAAQSGIISRILSSLKGIFAPDAPAETANAAADDSAPATADE
SQRQERRHPRRQGNNRRDRGSRDHREQREDQRRNKRQPPETVIETRVADDTEKTASDEQP
RREPRAERQRRRQDEKRQPQQEAKAQNAIVEETEDSIGEQEKPAPIMQRRQRRQLTQKVR
IQSKSDLDTAADATPAVMVEAIPAPIKPAVESVNSVESNETGSEQSTDTNRANAESGGMP
RRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLEYAAASPEMASGKVWVSYPVSQAYPLD
QAESTLQEDDVAISASPLLPAIVEDIAPVIETVEQDSPLAQAVSETPATASASSETDELE
YGNALSAEQTPEPQAQEDTPSQSSDGQPIIAAESTEAPTIAETIEEASVTEAAEDDVKAA
ETTVSDTVEGETVSPAANVSNDAADILKTAAAVPAEEPISQPEPVVTAARPLANAVDSPR
YKHLATAPMTKAPAPDYQPEQVRHSDWVRPEYQFTGKGAAGGHAAVNQATAPATKPTAAS
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttgattaacgcaactcagcaagaagagttgcgtgttgctttggttgat
ggtcaacggctgtatgatttggatatcgaaagtcccggtcatgagcagaagaaagcaaat
atctacaaaggtaaaatcacccgtattgaacccagtctcgaagccgctttcgtcgattac
ggcgcagaaagacacggttttctcccccttaaagaaatcgctcgcgaatatttccccaac
aactattcctctcatggccgccctaacatcaaagatgtattgcgtgaaggtcaggaagtc
attgttcaggtcgataaggaagagcgaggtaataaaggcgcagcactgacaacgtttatc
agtctggccggcagctatctggtcttgatgccaaacaaccctcgcgccggcggtatttcc
cgccgaatcgaaggtgatgaccgcacagagttgaaagaagcgctgggttcgttgcagtta
ccggacggtatgggattaattgttcgcaccgcgggcgtgggcaaatccgccgaagcgctg
caatgggatttggcgttccggctgaagcattgggaagccatcaagaaagcggcggaaggt
cgctcagcgcctttcctgatccaccaggaaagcaacgtcattgtacgcgcattccgcgac
tatttacgtcctgacatcggcgagatcctgatcgataaccctaaagtcctcgatctggcc
aaggagcatatttccgcgcttggccgtccagatttcagcagcaaaatcaaactgtacagt
ggtgaaattcctctgttcagccattatcaaatcgaatcccagatcgaatcggctttccag
cgcgaagtgcgtctgccgtccggagggtctatcgtcattgataccaccgaagcgttgacg
gcaatcgatatcaactcggcccgcgccacacgcggcggtgatattgaagaaacagccttc
aacaccaatctggaggctgccgatgaaatcgcccgacagttgcgtttacgcgacttgggc
ggtttgatcgttatcgactttatcgacatgacgccggttcgacaccagcgtgaagtggaa
aatcgcctgcgtgactcggtgcggcaggatcgcgctcgcattcagattggccgtatttca
cgtttcggcctgttggaaatgtcacgtcagcgcctgagcccctcattgggcgaatcaagc
catcacgtttgccctcgttgcagcggcaccggcaccgtgcgtgataatgaatcactctcc
ctttctattctgcgtctgattgaagaagaggcgctgaaagagaacaccaaagaagttcac
gcgatcgttcccgttcctatcgcttcctatctgttgaatgaaaagcgcgatgccgtaaat
gccattgagatgcgtcaaggtggcgtacgcgccattatcgttccgcacgatggcatgcag
acaccgcactactctgtggtgcgggtgcggaaaggtgaagaaaagacgacgctcagctac
ctgttgccccagcgactagaaaccgagacgcagcaattgcaggaagaacagactgttgaa
cgtaagcagcctgaacagcccgcactggcgacattcactatgacagatatgcctgtggcc
gaagaagaaacagaatctgtcgtaacgaaaaccgcgccggcagtaaaaccagccacagcg
gcacagtctggtattatcagccgcattctgagttcgttgaaaggcatttttgcacccgat
gcgcctgccgaaacagccaacgccgctgccgatgacagcgcacctgccaccgcggatgaa
agtcaacgacaggagcgtcgccatccgcgtcgtcagggtaataatcgccgcgatcgtggt
tcccgcgatcatcgtgaacagcgcgaagatcagcgccgtaacaagcgtcaaccgcctgaa
accgtcattgaaacacgtgttgcggatgatacggagaaaaccgcatccgacgagcaacca
cgccgggagccccgtgcagaacgtcagcgtcgtcgtcaggatgaaaaacgtcagccacag
caggaagccaaagcgcaaaacgcgatagtcgaggaaaccgaagacagcatcggcgagcag
gagaagcccgcaccgattatgcagcgccgccagcgccgtcaattgacgcaaaaagttcgg
attcaatctaaaagcgatctggataccgccgctgacgctacgccagccgtaatggttgaa
gccatacctgcaccaattaaacctgcggtggaatccgttaattcggtagagagtaacgaa
accggcagtgagcaatcaacggacaccaaccgtgcgaacgccgagagtggcggtatgccg
cgccgttcacgccgttcccctcgacatctgcgcgtcagtggccaacgtcgccgtcgttac
cgtgatgaacgttacccgttacaatcgccgatgccgttggaatacgcggccgcatcgcca
gaaatggcgtcaggcaaagtgtgggtaagctaccctgtatcacaagcttatccgttggat
caggctgagagtaccttgcaagaagatgacgtggcgatttcagcctcaccgcttctgccc
gccattgttgaagatatcgcgccggttattgaaaccgtcgagcaggactcgccactcgct
caggcggttagtgaaacacccgcaaccgcctcagcctcttcagaaactgacgagctagaa
tatgggaatgcgctttctgctgaacaaacgcctgaacctcaggcacaggaagacaccccc
tctcaatcgtcggatggacaaccgatcattgctgcggagtcaactgaagcgcctaccatt
gcagaaacgattgaggaagccagcgtcactgaagcggcagaggatgacgtgaaagctgct
gagactactgtgagcgatactgtagagggtgaaaccgtcagtcccgcggcaaacgtttct
aacgacgcggcggacatcctcaaaaccgcagcagcagttccggcagaagagcccatcagc
cagccagaaccggtcgtgacagccgcccgacctttggctaacgccgttgattctcctcgt
tacaaacatcttgcgacagcaccgatgactaaagcgccggcaccggattatcagccggag
caagtacgtcatagcgattgggtccgccctgagtatcaattcacagggaaaggcgcagca
ggcggccacgctgcggttaatcaggcaacggcccccgcaaccaaaccgaccgccgccagc
gaataa
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