Brenneria rubrifaciens: EH207_07295
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Entry
EH207_07295 CDS
T05976
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brb
Brenneria rubrifaciens
Pathway
brb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EH207_07295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brb03400
]
EH207_07295
Enzymes [BR:
brb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EH207_07295
DNA repair and recombination proteins [BR:
brb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EH207_07295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCR08335
UniProt:
A0A4P8QVW2
LinkDB
All DBs
Position
complement(1546964..1550428)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPEKYRYSLPLRAGEQRLLGQLTGAACAVECAEIIDRHNGLVVLITPDMQNALRLRDEIQ
QFTEHSVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPQMGRGVLILPVNTLMQRVCPH
AFLHGHALMLNKGQHLSRDKLRTQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVLQINLLPAHEFPTDKTAIECFRSQWRERFEVRRD
AEHIYQQVSKSVWPAGIEYWQPLFFSQPLPALFSYFPENTLLVNTGDIQQGAERFWQDIG
QRFESRRVDPMRPLLPPESLWLRVDMLFSELKNWPRVHLRTDTLPGKAAHANLGYLPLPD
LAIQPQHKAPLDTLRRFIEQFFVEQHDGQVIFSVESEGRRETLQELLARIKLNPTPIARL
GQAQHRTTSLIIGASEHGFIDTQRQRALICESDLLGERVSRRRQDNRRTINTDTLIRNLA
ELSSGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGG
ADESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRTVKSGFAFKHDKTQYQLFCE
SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVL
VPTTLLAQQHYDNFRDRFANWPVKIEMISRFRSAREQTQILEETRQGKVDILIGTHKLLQ
SDVCWHDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPARRLAVKTFVREYDNLVIREAILREVLRGGQVYYLYNDVENIEKAAQRLAELVPE
ARITIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQ
LHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGA
GELLGEDQSGQMTSVGFSLYMELLENAVDALKAGREPSLEDLISSQTDVELRLPALLPED
FIPDVNTRLSFYKRIASAKNTGELDELKVELIDRFGKLPDATRHLLQVAALRQQAQALGI
KRIEGNEKGGFIEFGEKNRVDPSHLIGLLQREPGTYRLDGPARLKFIKDLSARPLRIEFI
ESLLTSMAQHTLAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaatatcgctattctttgccgctcagagcaggtgagcaacgcctgctgggt
cagttgaccggtgcggcctgcgccgtagaatgcgcagagatcattgaccgccataatgga
ttggtcgttcttatcaccccagatatgcaaaatgcgctgcgtttgcgtgatgaaatacag
cagtttaccgagcacagcgttaccaccttacccgattgggaaaccttaccttacgacagt
ttttctccccaccaggaaatcatttcaacccggctttcgacgctgtaccagcttccccag
atggggcgcggcgtcttaatcctgccggtcaatacgctgatgcagcgcgtgtgccctcac
gcgtttctgcacggccatgcattgatgctgaataaaggtcagcatttatcgcgcgacaaa
ttacgaacccagttggaacaggcgggctaccgcagcgtcgaccaggtcatggagcacggc
gaatacgccacccgcggcgcgctgctggatctcttccctatgggaagcgaagaaccctac
cgtattgatttctttgacgatgagattgacagcctgcggctgttcgatgtggatacgcag
cgtacgttgaatgaagttctgcaaatcaatttactgcccgcccacgagttccctaccgat
aaaaccgcgattgaatgcttccgcagccagtggcgcgaacgatttgaagtccgtcgtgat
gccgagcatatttatcagcaggtcagcaaaagcgtctggcccgccggtattgagtattgg
cagccgctgtttttcagtcagcccttaccggcgttgttcagctatttcccggaaaatacg
ctgctcgtcaacaccggcgatatccaacagggcgccgagcgtttttggcaggatatcgga
cagcgtttcgagagccgccgggttgacccgatgcgtccgctgctgccgcctgagtcgctg
tggttgcgggttgatatgctgttttcggaactgaaaaactggccgcgagttcacctgcgt
accgataccctgccgggaaaagcggcccatgcgaatctgggttatctgccgctgccggat
ctggcgattcagcctcaacacaaagccccgctggatacgctgcgccgttttatagaacaa
tttttcgttgaacagcatgacggacaagtgattttttccgttgaaagtgaaggccggcga
gaaacccttcaggaactgctggcgcgcatcaagctgaatcctacgccgattgcccgtctg
ggacaggcgcagcatcgaaccaccagtttaatcatcggcgccagtgaacatggttttatc
gacactcagcgtcaacgcgcgttgatctgcgaaagcgatctcctgggcgaacgcgtcagc
cgccgccgtcaggacaatcggcgaaccatcaatactgacacattgatccgcaatctggcg
gagctcagctcaggtcaacccgtggtgcatctggaacacggtgtgggacgctacgccgga
ttgacgacgctggaagccggcggcattaaagccgaatacctgattttgacctacgccggg
gaagacaagctgtatgtcccggtgtcttcactgcacctcatcagccgctatgcgggcggc
gctgacgaaagcgcgccattgcataaactcggcggcgatgcctggtcgcgcgcgcggcag
aaagcggcggaaaaagtgcgggatgttgccgcggaactgctggatatctatgcgcaacgg
accgtcaaaagcggtttcgcattcaagcatgacaaaacgcagtatcagcttttctgtgag
agtttcccttttgaaaccacgccggatcaggctcaggccatcaatgccgtcctgagcgac
atgtgccagccgctggctatggatcggctggtgtgcggcgacgtaggcttcggtaaaacc
gaagtggccatgcgcgccgctttcctggcggtagaaaaccataagcaggtggccgtgctg
gtgcccaccacgctgctggctcagcagcattacgataacttccgcgatcgctttgccaac
tggccggtgaaaatcgaaatgatttcccgtttccgcagcgcgcgtgagcaaacccaaatt
ttggaagaaacgcggcaaggtaaagtcgatattctgatcggtacgcataaactgttgcag
agcgacgtctgctggcacgatctcggcctgctgatcgtggacgaagaacaccgttttggc
gttcgccacaaagaacgaataaaagcgatgcgcgccaacgtggacattctgacgctaacc
gccacgccgattccccgtacgctgaatatggccatgagcggcatgcgcgacctatcgatt
atcgccaccccgccggcacgccgtttagcggtgaaaacctttgttcgcgaatacgataat
ctggtaattcgcgaagcgattctgcgcgaggtgctgcgtggcggccaagtctattatctc
tacaacgatgtggagaatatcgaaaaagccgcgcagcggctggctgaactggtgccggag
gcccgtattaccatcggtcacgggcagatgcgcgagcgcgatctggaacgcgtgatgaat
gacttccatcaccagcgtttcaacgtgctggtatgtaccaccattattgaaaccgggatt
gatattcccagcgccaataccatcattatcgaacgggccgatcacttcggactggcacaa
ttgcatcagctacgcggccgcgtaggacgctcgcaccatcaggcctacgcttacctgttg
acgccaaaccccaaagccatgagcaccgacgcacacaaacgcctggaagccatcgcctca
ctggaggatttaggcgcgggctttgccctagccacgcacgatctggaaattcgtggcgcg
ggtgaactgctgggtgaagatcagagcgggcagatgaccagcgtcggattctcgttgtat
atggaactactcgaaaacgccgttgacgctttgaaagccggacgggagccttcgctggaa
gatttaatcagcagccagacggacgtagaactccggttgccagccctgctgccggaagat
ttcattcccgatgtcaatacgcgtttatccttttacaagcgcattgccagtgcgaaaaat
acgggtgaactggacgaactcaaagttgagctaatcgatcgcttcggcaaactgcccgat
gccacgcgccatctgttgcaggtcgcggcgctgcgtcagcaggcgcaggcgctgggaatc
aaacgtattgaaggcaacgagaaaggcggtttcatcgaattcggtgaaaagaatcgcgtg
gacccatcccacttgattggtttgttgcaacgcgaaccgggcacctaccgactggacggc
ccggcgcgtctgaagtttattaaagacctgagcgcccgtccgctacgtattgagtttatc
gaatcgttattaaccagtatggctcaacatacgctggcggcgtaa
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