Brenneria rubrifaciens: EH207_08025
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Entry
EH207_08025 CDS
T05976
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
brb
Brenneria rubrifaciens
Brite
KEGG Orthology (KO) [BR:
brb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brb03016
]
EH207_08025
Enzymes [BR:
brb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EH207_08025
Transfer RNA biogenesis [BR:
brb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EH207_08025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QCR08469
UniProt:
A0A4P8QSE8
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All DBs
Position
complement(1716644..1718578)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
TATLHTEKEREIAEPESLIEPFLTRFVGRVQKKDDRLSIVPDHPLLKEAIPCRAARDVSH
AFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLAPWWVTLSRHNLEQAAPEADAT
DRNDGELVSEDLTALSFVTIDSASTEDMDDALYAQDNGDGTLQLTIAIADPTAYVAIGSE
LDNIARRRAFTNYLPGFNIPMLPRPLSDDICSLRPNERRPVLACRVTIGADGALGDDIHF
FAAWIESKAKLVYDEVSDWLEVKGEWRPSSDAIAEQIRLLHRICLARAEWRNAHALVFKD
RPDYRFLLGEKGEVLDIVVEPRRIANRIVEEAMIAANICAALVLRDKLGFGIYNIHNGFD
PASVEQAVTVLDTHGIKADAQALLTLEGFCTLRRELDAQPTSFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIAGQPADKPQDEITAQLAERRRLNRM
AERDVGDWLYARFLKDKAGTDTHFPAEIMDVTRGGLRVRLLDNGAAAFIPSSFIHPVRDE
LVCSQEMGTVSVKGEVVYRQGDNFNVLIAEVRLETRSILAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcattctcagacgcca
cgtgttgaaggtgtcgttaagggcaccgacaaaggctttggctttcttgaagctgatgcg
caaaagagctatttcatcccgcctccgcacatgaagaaggtgatgcatggcgaccgaatt
accgccacgctgcataccgaaaaagagcgtgagattgcagagcctgaatccctgattgaa
cctttcctgacccgctttgtggggcgggttcagaaaaaagacgatcgtctatccatcgtt
cccgatcatccgctgttaaaagaggcgattccctgccgcgccgcgcgtgatgtcagccat
gcgtttcaggaaggggactgggccgtggcggaaatgcgccgccatccgcttaaaggcgat
cgcggctttcacgccgagctgacgcaatatatcaccaccggcgatgacccgctggcgccg
tggtgggtgacattgtcacgtcacaatctggagcaggccgcgccggaagctgacgcgact
gatcggaatgatggcgaactggtgagtgaggatctgaccgcgctcagctttgtcaccatc
gacagcgccagcacggaagacatggatgatgccctgtacgctcaggataacggcgacggc
acgctgcaactgactatcgcgattgccgacccgacagcctatgtcgccatcggcagcgag
ctggacaacatcgcgcgccggcgagctttcaccaactacctgcccggcttcaatattccc
atgctgccgcgcccgttgtcagacgatatctgttcgctgcggccgaatgaacgccgcccg
gtgctggcctgccgcgtcaccattggcgcggatggggcgctgggcgacgatatccatttc
ttcgccgcctggatcgaatccaaagccaagctggtttatgacgaagtttccgactggctc
gaggtaaaaggcgaatggcgcccgtccagcgacgccattgccgaacaaattcgtttattg
caccgtatttgtctggcccgcgctgagtggcgcaatgcccatgcgctggtgtttaaagat
cgccctgactaccgcttcctgttaggtgaaaaaggcgaagtattggatatcgtggtcgaa
ccgcgccgtatcgctaaccgcattgtggaagaagcgatgatcgcagccaacatctgtgcg
gcgctggtactgcgcgacaaattgggttttggcatttacaacattcataacggctttgat
cccgcctcggtcgaacaggcggtaaccgtgctggatacccacgggatcaaggccgatgcg
caggcattactgacgcttgagggcttctgtacgcttcgccgggaactcgatgcgcaaccc
acatcgttcctggatagccgtatccgccgcttccagtctttcgccgaggtcagcaccacg
ccaggcccccactttggtctgggtctggaagcctatgcgacctggacgtcaccgattcgt
aaatacggcgatatgattaaccatcgcctgttgaaagcggtgatcgccggtcagcccgct
gacaaaccgcaggacgaaattaccgctcaattggcggaacgccgccgcctgaaccggatg
gcggagcgagatgtcggcgactggctgtatgcccgttttctgaaggataaagccggaacg
gacactcacttcccggcggagatcatggatgtcactcgcggcggtctgcgcgttcgattg
ctggataatggcgcggcggcattcatcccgtcctcctttatccatcccgtgcgcgacgaa
ctggtatgcagccaggagatgggaaccgtctccgtcaaaggcgaggtggtgtaccgtcag
ggcgataacttcaacgtgctgattgccgaagttcgtctggaaacccgcagtatactggca
aaacctgccgcataa
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