Brenneria rubrifaciens: EH207_13585
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Entry
EH207_13585 CDS
T05976
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
brb
Brenneria rubrifaciens
Brite
KEGG Orthology (KO) [BR:
brb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brb03009
]
EH207_13585 (rlmD)
Enzymes [BR:
brb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EH207_13585 (rlmD)
Ribosome biogenesis [BR:
brb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EH207_13585 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
TRM5-TYW2_MTfase
RrnaAD
MTS
Methyltransf_11
Cons_hypoth95
Methyltransf_ANTKMT
Methyltr_RsmB-F
Methyltransf_4
FtsJ
Ubie_methyltran
Methyltransf_23
PabTrmU54_TRAM_dom
DUF4853
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QCR09457
UniProt:
A0A4P8QQN6
LinkDB
All DBs
Position
complement(2982784..2984127)
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AA seq
447 aa
AA seq
DB search
MAQFYSSNRRVTTRRTITVTVDSLDPFGQGVARHQGKTIFVTGALPGERAEIQLTDEKRQ
FAHAKLKRILTRSAERVEPACPHFNTCGGCQQQHADIELQQRSKASALKRMMSYEMDGAS
LPVTMLAGPSYAYRRRARLALYYFQGKQQAKQDRLIMGYRQAGSHDLVNINACPVLRPEL
ENLLTPLRDCLSRLQAVKRLGHVELVLADNGPLVVLRHLDSLSPADTQALRDFAQRRGVA
VYLAPDAASLMCLSGETPVYRIAGLELAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDS
ILDLFCGMGNFTLPLAQRAARVVGVEGVVALVEKGRENARRNAIGNVTFFHQNLEDDVTR
QPWAAQGFDKILLDPARAGAAGVMAQIVKLAPQRVVYVSCNPTTLARDSKILLAAGYRLA
NVAMLDMFPHTGHLESMALFLQGSGRR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactcttcaaaccggcgcgtgacgacccggcgaacaatcacggtgacg
gtggactctctcgatccttttggtcagggcgtggcacggcatcaagggaaaaccattttt
gtgaccggtgctctgccgggagaacgggccgaaattcaactgaccgatgaaaagcgccag
ttcgctcatgcaaaacttaaacgtattttgacgcgcagcgctgaacgcgttgaaccggcg
tgcccgcatttcaatacgtgcggcggctgccagcagcagcatgccgatattgaactgcaa
cagcgtagcaaagcgtcggcgctcaagcgcatgatgtcctatgaaatggacggcgcttca
ctgccggtgacgatgctcgccgggccatcttatgcctaccggcggcgcgcccggcttgca
ttatactattttcagggaaaacagcaggcgaaacaggaccggctgattatgggctatcga
caggcgggttcccacgatctggtgaacatcaacgcctgtccggtattgcgcccggagctg
gaaaatctgctgacgccgctgcgtgactgcctgagccgcctgcaagcggtgaaacggctg
gggcatgtggagctggtgctggcggacaacgggccgctagtggtattgcgccatctggac
tcgctgagtccggccgatacgcaggcgctgcgtgatttcgcgcaacggcgcggcgtcgcg
gtttatctggcgcccgatgcggcgtcgctgatgtgtctttccggcgaaacgccggtgtat
cggattgcgggattggagctggcgttcagtccgcgggattttattcaggtcaatgatgcg
gttaaccagcagatggtcgcgcaagcgctggcctggctggatgttcagccacaggacagc
atcctggatctgttttgcggcatgggcaattttaccctcccgctggcgcagcgggcggcc
cgcgtggttggcgtggaaggcgtcgtggccctggtggaaaaagggcgcgagaatgcccgg
cgtaacgcgatcggtaatgtcacattttttcaccaaaatctcgaagatgatgtcactcgg
cagccctgggctgcccagggttttgataaaatattgctagatccggcacgagctggcgca
gcgggcgtgatggcgcagatcgtcaaactcgcgcctcagcgtgtggtttacgtatcctgt
aatcccacgacgctggcgcgcgacagcaaaatattgctcgcggccggttatcggctggcg
aacgtcgccatgctggatatgtttccacataccgggcaccttgaatctatggcattgttt
ttgcaaggttctggccgacggtaa
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