Bradyrhizobium sp. CCGE-LA001: BCCGELA001_00555
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Entry
BCCGELA001_00555 CDS
T04273
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
brc
Bradyrhizobium sp. CCGE-LA001
Brite
KEGG Orthology (KO) [BR:
brc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brc03016
]
BCCGELA001_00555
Enzymes [BR:
brc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BCCGELA001_00555
Transfer RNA biogenesis [BR:
brc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BCCGELA001_00555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AMA54899
LinkDB
All DBs
Position
complement(124079..124693)
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AA seq
204 aa
AA seq
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MTVRLHRGDLPDLTRYTGAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTDA
PNLKALLANPAITKIFHFARFDVAVLYQTFGVMTGPIYCTKIASRLTRTYTDRHGLKDLV
REVLNIDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRSQLAQSC
FDFLPTRALLDLQGWAEEDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtacgcctgcatcgcggcgacctgcccgacctcacgcgctacaccggagcggtg
gcgatcgacaccgagaccatggggctcaatccgcaccgtgaccggctctgcgtggtgcag
ctctcgcccggcgacggcagcgccgacgtggtgcagattcccaagggccataccgacgcg
ccgaacctgaaggccctgctcgccaatcccgccatcacgaagatcttccacttcgcgcgc
ttcgacgtcgcggtgctgtaccagaccttcggcgtcatgacagggccgatttattgcacc
aagattgcctcgcgcctgacccgcacctacaccgatcgccacggcctgaaggacctcgtg
cgcgaggtgctcaacatcgacctctccaagcagcagcagtccagtgactggggttccgac
agcctgacggagccgcagctcgcctacgccgcgtcggacgtgctgcatctgcatgcgctg
cgcgagcggctcgatgccatgctggtgcgggaaggccgcagccagctggcgcagtcctgt
ttcgacttcctgccgacgcgcgccttgctcgacctccagggctgggcggaagaggacatt
ttcgcgcattcctga
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