Brevundimonas sp. DS20: JL11_02445
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Entry
JL11_02445 CDS
T04101
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JL11_02445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brd03400
]
JL11_02445
Enzymes [BR:
brd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JL11_02445
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JL11_02445
DNA repair and recombination proteins [BR:
brd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JL11_02445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALJ07326
LinkDB
All DBs
Position
complement(500634..501497)
Genome browser
AA seq
287 aa
AA seq
DB search
MPELPEVETVRRGLTPVLAGARLSRVRINRPDLRFPFPEGFVERLEGATVERVDRRAKYL
LLPLSTGETWITHLGMTGRFTLDGAQLGEFEEAAPIAGKHEHFSGCAERDGLATRIGYAD
ARRFGFMGLIPTAQVEAHPWFAGLGPEPLGNGFSGAHLAEAFAGKSQNIKVSLLDQRIVA
GLGNIYVCEALYRARISPLVAAGSLSKARLETLASVVRDVLNDAIAAGGSTLKDFANAEG
GQGYFQHRFDVYGREGEPCRGEGCTGTVARIVQGGRSTFYCPSCQKR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaggtcgaaaccgtccggcgcggcctgacgccggtgctggcgggc
gcgcgtctgtcgcgggtgcggatcaaccggcccgacctgcgctttccgttcccggaaggc
ttcgttgagcggctggagggggcgacggtcgaacgcgtggaccggcgagccaaatatctg
cttctgcccctgtccaccggcgagacctggatcacccatctgggcatgaccggccgtttc
accctggacggcgcccagctgggcgagttcgaggaggcggcgcccatcgcgggcaagcac
gagcatttcagcggctgcgccgagcgcgacggccttgcgacccggatcggctacgccgac
gcgcgccggttcggcttcatgggcctgatccccaccgcccaggtcgaggcccacccctgg
ttcgccggcctggggcccgagccgctgggcaatggcttttccggcgcccatctggccgag
gccttcgcgggcaagagccagaacatcaaggtctccctgctggatcagaggatcgtcgcc
ggcctgggcaacatctatgtctgcgaggccctgtaccgggcccggatctcgcccctggtg
gcggccggatcgctgtcgaaggcgcggctggagaccctggcctcggtggtccgcgacgtg
ctgaacgacgccatcgccgccgggggatcgaccctgaaggacttcgccaacgccgagggc
ggccaaggctatttccagcaccggttcgacgtctacggccgcgagggcgaaccgtgccgg
ggcgagggctgcacggggacggtcgcccggatcgtccagggcggacgctccaccttctac
tgcccgtcctgccagaagcgctga
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