Brevundimonas sp. DS20: JL11_03365
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Entry
JL11_03365 CDS
T04101
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL11_03365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brd03021
]
JL11_03365
03019 Messenger RNA biogenesis [BR:
brd03019
]
JL11_03365
Transcription machinery [BR:
brd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JL11_03365
Messenger RNA biogenesis [BR:
brd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JL11_03365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
ATPase_2
OB_RNB
NACHT
S1CSD-TOTE-2
AAA
AAA_14
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALJ07489
LinkDB
All DBs
Position
697420..698838
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AA seq
472 aa
AA seq
DB search
MTDVTDTPETEIEAEAPTHHGAAHEAGEAAGADSGVDTTADEDEDGEPVVPNGRITLAEL
NEKTPADLVAFAEQLEVENASNLRKQDLLFAILKALAEEEVEIIADGVLEILPDGFGFLR
SPDANYLPGPDDVYVSPSQIRRFGLRSGDTVHGAVRAPREGERYFALLKVDTINLEDPEM
VKTKVLFDNLTPLYPEERLHMEIQDPTLKDRSGRVIDIVAPLGKGQRCLIVAPPRVGKTV
MLQNIAKSIERNHPEVFLIVLLIDERPEEVTDMQRTVKGEVVASTFDEPATRHVAVAEMV
IEKAKRLVEHKKDVVILLDSITRLGRAYNATVPSSGKVLTGGVDANALQRPKRFFGAARN
VEQGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAIDVLKSGTR
KEDLITPKDQLAKTYVLRRILNPMGPQDAIEFLLDKLRQSKNNADFFQSMNT
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtcaccgacactcccgagaccgaaatcgaggccgaagccccgacccatcac
ggcgccgcgcacgaggccggcgaggcggcgggcgcagactcgggcgtggacaccacggcg
gacgaggatgaggacggcgagccggtggtgccgaacggccggatcaccctggccgagctg
aatgagaagacgccggccgacctggtcgccttcgccgaacagctggaggtcgagaacgcc
tccaacctgcgtaaacaggatctgctcttcgccatccttaaggccctggccgaggaagag
gtcgagatcatcgctgacggggtgctggaaatcctgcccgacggtttcggcttcctgcgc
agcccggacgccaactatctgcccggcccggacgacgtctatgtgtcgccgtcccagatt
cgccgtttcggcctgcgctcgggcgatacggtccatggcgccgtgcgggcgccgcgcgag
ggcgagcgctatttcgccctgctgaaggtcgacaccatcaatctcgaagaccccgagatg
gtgaagaccaaggttctttttgacaacctgacgcccctctatcccgaggagcggctgcac
atggaaatccaggatccgaccctgaaggatcgctcgggccgggtcatcgacatcgtcgcc
ccccttggcaagggccagcgctgcctgatcgtggcgccgccgcgggtcggcaagacggtg
atgctgcagaatatcgccaagtcgatcgagcggaaccacccggaggtcttcctgatcgtc
ctgctgatcgacgaacggccggaagaggtcaccgacatgcagcggaccgtcaagggcgag
gtcgtggcctcgaccttcgacgagccggccacgcgccacgtcgccgtcgccgagatggtg
atcgaaaaggccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctggactcc
atcacccgcctgggccgggcttacaacgccaccgtcccgtcgtcgggcaaggtgctgacc
gggggcgtggacgccaacgccctgcaacggcccaagcgcttcttcggcgcggcgcggaat
gtggagcagggcgggtctctgaccatcatcgccacggccctgatcgacaccggcagccgg
atggacgaggtgatcttcgaagagttcaagggcaccggcaactcggaaatcgtgctggac
cgcaaggtggccgacaagcgcatcttccccgccattgacgtgttgaagtccggcacccgc
aaggaagacctgatcacgccgaaggaccagttggccaagacctatgtgctgcgccgcatt
ctgaatccgatgggtccgcaggacgcgatcgaattcctgctcgacaagctgcgtcagtcg
aagaacaacgcggacttcttccagtcgatgaacacctga
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