Brevundimonas sp. DS20: JL11_05665
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Entry
JL11_05665 CDS
T04101
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL11_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brd03019
]
JL11_05665
03009 Ribosome biogenesis [BR:
brd03009
]
JL11_05665
Enzymes [BR:
brd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JL11_05665
Messenger RNA biogenesis [BR:
brd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL11_05665
Ribosome biogenesis [BR:
brd03009
]
Prokaryotic type
rRNA helicases
JL11_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
ALJ07885
LinkDB
All DBs
Position
1169218..1171131
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AA seq
637 aa
AA seq
DB search
MPFPAVHPALDRALINKGYAEPTPVQAAVLEGEHADRDLLVSAQTGSGKTVAFGLAAAPT
LLGDSPQFGPGGAPLCLAIAPTRELAMQVAAELQWLYADSGAKIATCVGGMDARREARAL
GFGVHIVVGTPGRLKDHIDRGNLDLSQLKVAVLDEADEMLDMGFREDLEHILDQAPPERR
TLLFSATLAREIVTLAKRYQKDAVRIDATDKSRQHADIEYRAYRIAPNEIEHAVVNTLRW
FEAPRAMVFCSTRDSVRHLQSSLLERGFSTVSLSGEMGQRERTDALQSLRDGRARVCVAT
DVAARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGVSVMLVPHSRRRKAERLMD
EAGIDAVWSGAPTFDEIRKADEDRLLSPSHFEAEVSDEDMIVAKRMIAERTPDEIAAALV
RLLRKEQPAPEELSDPGADRGPAKRDRAARTDDGTAAQPWPGERLGADEVVWFRLDVGRN
KNADPKWLIPLICRIGGISKPQIGSIRTFPEETRFEIAKTHEKAFREAVAASKEEVKITP
SEAPTPGSMKASRYAGKPREDGDRPFKKTPYKRAEGGEGDARPPFKKKPWAPKTDGAANP
RSNAAGDKPFAKKPFKAKPGFKKDGFKKDGFKGKPKG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgccctttcccgccgttcaccccgcgctcgaccgcgctctgatcaacaagggctatgcc
gaaccgaccccggttcaggccgccgtcctggaaggcgagcacgctgaccgcgacctgctg
gtctcggcccagaccgggtcgggcaagacggtcgccttcggtctggccgccgcgccgacc
ctgctgggcgacagtccccagttcggccccggcggcgcgcccctgtgcctggccatcgcc
ccgacgcgggagctggccatgcaggtcgccgccgagctgcaatggctgtacgccgactcc
ggcgccaagatcgccacctgcgtcggcggcatggatgcgcgtcgtgaagcccgcgccctg
ggtttcggcgtccatatcgtcgtcggcacgcccggccgtctgaaggaccatatcgaccgg
ggcaatctggacctgtcgcagcttaaggtcgcggtgctcgacgaggccgacgagatgctg
gacatgggcttccgcgaggatctggagcacatcctggaccaggcgccgcccgaacgccgc
accctgctgttctcggccaccctggcgcgcgagatcgtgaccctggccaagcgctaccag
aaggatgcggtgcggatcgacgcgaccgacaagtcgcgccagcacgccgacatcgaatac
agggcctatcgcatcgcgcccaatgagatcgaacatgcggtggtcaacaccctgcgctgg
ttcgaggcgccgcgggccatggtcttctgctccacgcgcgacagcgtgcggcatctgcaa
tcgtcgctgctggagcggggcttctcgaccgtcagcctgtccggcgaaatgggccagcgc
gagcggaccgacgcgcttcagtcgctgcgggacggccgcgcccgcgtctgcgtcgccacc
gacgtcgccgcgcggggtctggacctgcccgacctgggcctggtcatccacgccgaactg
ccgatgaaccgcgccggcctgctgcaccgttcgggccggacgggccgggcgggcaagaag
ggcgtctcggtcatgctggtgccccactcgcgtcgccgcaaggccgagcgtctgatggac
gaggcggggatcgacgccgtctggtccggcgcgcccaccttcgacgagatccgcaaggcc
gatgaggaccgtctgctgtcgccgtcgcatttcgaggccgaggtgtcggacgaggacatg
atcgtcgccaagcggatgatcgccgagcgcacgcccgacgagatcgccgccgccctggtt
cgcctgctgcgcaaggaacagccggcgccggaagaactgtccgatccgggcgccgatcgc
ggaccggccaagcgcgaccgggccgcgcgcaccgacgacgggaccgccgcccagccctgg
cccggcgaacgcctgggcgccgatgaggtggtctggttccgcctggacgtgggccgcaac
aagaacgccgaccctaaatggctgatcccgctgatctgccgcatcggcggtatttccaaa
ccccagatcggctcgatccgcaccttccctgaagagacccggttcgagatcgccaagacc
catgaaaaggccttccgcgaggcggtcgccgcttcgaaggaagaggtgaagatcacgccg
tcggaagcgcccacgccggggtcgatgaaggcgtcccgctacgccggcaagccgcgcgag
gacggcgaccgccccttcaagaagacgccctacaagcgcgccgaaggcggggagggcgac
gcccgtccgccgttcaagaagaagccctgggcgcccaagacagacggcgccgccaatccg
cgttcgaatgcggcgggcgacaagcccttcgccaagaagccgttcaaggccaagccgggc
tttaagaaggacgggttcaagaaggacggattcaagggcaagcccaagggctga
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