Brevundimonas sp. DS20: JL11_12320
Help
Entry
JL11_12320 CDS
T04101
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL11_12320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brd03400
]
JL11_12320
Enzymes [BR:
brd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL11_12320
DNA repair and recombination proteins [BR:
brd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JL11_12320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_25
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ALJ09037
UniProt:
A0A0P0DL29
LinkDB
All DBs
Position
complement(2519233..2522700)
Genome browser
AA seq
1155 aa
AA seq
DB search
MDQQVTVHRTDADLGGAPEGLDALVVAERVKAAGGVGVFVARDYQRAGGFVQAFRFFSQD
VEILEYPAWDCLPYDRLSPTAGIAAQRMATLTRLAQRKPGEGPVLVVTTVGAAMQRTPPR
SVTTQAGFETRVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPV
RLDMFGSELESIRTFDPETQRSTGQMTAVSLAPVSEALLDADAISRFRTGYLKLFGAPGD
DPLYATISEGARRQGMEQWLPLFYESLDSLFDYLPDQAQVFLDNQAESARAERWDLIVDA
YEARAEAAKAQKGKGGGHAAANRALPPQSLYMDAGDWNQALAGRSVRRLTPFTGGGEDAG
GRLGRTFAAERAQDSVNLFEAVAAHAQALKAEGRRVLFASWTEGSSERLATLLGDHGLDH
IVAVRDWADVLAAPKDVYLRGVLPVEHGFVTDAVAVISETDILGDRLARPRKKRRASNFL
AEASALTTGDLVVHLDHGIGRYEGLKTLDIQEAPHDCLELLYAGDSKLYLPVENIDLLTR
YGTDADGVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETEAVTPAPGLFAE
FCARFPYEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGKQV
AVVAPTTLLARQHYKTFTERFAGWPVKVRQLSRMVTGKEATETRAGLKDGSVEIVVGTHA
VLAEQVGFRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIRE
MSIIATPPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPDIEKFLREQ
VPEIKFVVGHGQMSATQLEEVMSAFYEGEYDVLVSTTIVESGLDIPTANTLIVHRADMFG
LAQLYQIRGRVGRSKARAFAYLTTDPVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQ
RGGGNLLGDEQSGHIREVGVELYQQMLEDAVAELREKGEGLNVDRGWSPSINVGASVLIP
EDYVPDLNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGVKANCRRA
CIEKIDIGPRGAVLTLRDNSFPNPVGLVGLIQKNHAFWKIRPDQKIVVTGDWPTAEDRLK
VAERITADLARVAGA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcaggtgactgtgcatcggaccgacgccgatctgggcggggcgccggaaggt
ctggacgccctggtcgtggcggagcgggtcaaggccgccggcggcgtgggggtctttgtc
gcgcgcgactaccagcgggccggcggctttgttcaggcgttccgattcttctcgcaagac
gtcgaaattctggaatatccggcctgggactgcctgccctatgaccggctgagccccacg
gcggggatcgccgcccagcggatggcgaccctgacgcggctggcgcagcgcaaaccgggc
gaggggccggttctggtagtcacgacggtcggcgcggccatgcagaggacgccgccccgg
tcggtgacgacccaggcggggttcgagaccagggtcggccgcgatctcgatatccaggcg
ctggagcggtatttcgccgccaacggctatgtccgggcctcaaccgtgtcggagcggggc
gagttcgcggtgcggggcggggtggtggacgtctatccgccgggcttcgaggagccggtg
cggctggacatgttcgggtcggaactggaatcgatccgcaccttcgaccctgagacccag
cgctcgaccgggcagatgacggccgtgtcgctggcgcccgtgtcggaggccctgctggat
gctgacgccatatcgcgcttccgcaccggctatctgaagctgttcggggcgccgggcgac
gatcccctgtatgcgaccatcagcgagggcgcgcggcgtcaggggatggagcagtggctg
ccgctgttctacgaaagcctggacagcctgttcgactatctgccggatcaggcgcaggtc
tttctggacaatcaggccgaaagcgcgcgggccgagcggtgggatctgatcgtcgacgcc
tatgaggcgcgggccgaggcggccaaggcccaaaaggggaaggggggagggcatgcggcc
gccaatcgcgccctgccgccgcaatccctctatatggacgccggcgactggaaccaggcc
ctggccgggcggtcggtgcggcggctcacgccctttacgggcgggggcgaggacgcgggc
ggtcggctgggccggaccttcgcggccgagcgagcacaggacagcgtcaacctgttcgag
gcggtcgcggctcatgcccaggcgctgaaggccgaggggcgtcgggtgctgttcgcctcg
tggaccgaaggctcgtcggagcgcttggcgaccttgctgggcgaccacggcctggatcat
atcgtcgccgtgcgcgactgggccgatgtgctggcggcgcccaaggacgtgtatctgcgc
ggcgtcctgccggtggagcatgggttcgttacagatgcggtcgccgtcatctccgaaacc
gacatcctgggcgaccggctggcgcggccgagaaagaagcggcgggcgtccaacttcctg
gccgaggcctcggccctgacgaccggcgatctggtggtccacctggatcacggcatcggg
cggtatgaggggctgaagaccctggatatccaggaagcgccgcacgactgcctggagctg
ttgtacgccggtgacagcaaactctatctgccggttgaaaacattgatcttctgacccgg
tacggcacggacgccgacggggtgcagctggacaggctgggcggggcgggctggcaggcg
aggaaggctaaggccaaggaacggctgcgcgccatggccgaggggctgatcgccctggcc
gccaagcgggcgctgcgcgagacggaggcggtgacgccggcgccgggcctgttcgccgaa
ttctgcgcccgcttcccctatgaggagacggacgaccagctgaacgccatcggcgacgtg
ctggaggacctgggcaagggcacgccgatggatcgcctgatctgcggcgacgtgggcttc
ggcaagaccgaggtggcgctgcgcgccgccttcgtcgtggccatgaccggcaaacaggtg
gcggtggtggcgccgactaccctgctggcgcgccagcactacaagaccttcaccgaacgc
ttcgccggctggccggtcaaggtgcgccagctgtcgcggatggtgacgggcaaggaggcg
accgaaacgcgggcggggctgaaggacggctcggtcgagatcgtcgtcggcacccatgcg
gtcctggccgaacaggtcggtttccgcgacctgggcctggtgatcgtggacgaggagcag
cacttcggcgtcaagcacaaggaaaagctgaagaccctgcgcgccgacgttcatctgctg
accctgaccgccaccccgatcccgcgcaccctgcagatggccctgtcgggcattcgcgag
atgtcgatcatcgccaccccgccggtcgatcgcctggcggtgcggacctatgtgacgccc
tgggatccggtgctggtgcgcgaggccctgctgcgcgagaaatatcgcggcggtcaggcc
tattatgtcgcgccgcgtctgaaggacctgccggacatcgagaaattcctgcgcgagcag
gtgccggagatcaagttcgtggtcggccacggccagatgtcggcgacccagctggaggag
gtgatgagcgccttctacgagggggagtacgacgtcctggtctcgaccaccatcgtagag
agcgggctggatattccgacggccaacaccctgatcgtgcaccgggccgacatgttcggc
ctggcccagctgtaccagatccggggacgggtaggccggtccaaggcccgggccttcgcc
tatctgaccaccgatccggtcaagccgatgaccctgtcggccgagcggcgtctgcaggtg
ctgcagtcgctggacaatctgggcgccggcttccagctggccagccacgacctggaccag
cgcggcggcggcaatctgctgggcgacgaacagtcgggccatatccgcgaggtcggggtc
gagctttaccagcagatgctggaggacgcggtcgccgaactgcgcgagaagggcgagggg
ctgaatgtggatcgcggctggtcgccgtcgatcaacgtcggcgcttccgtcctgattcca
gaggactacgtgccggacctgaacgtccgtctcagcctgtatcgccgcctgtccgacgcc
gaacaggccgaggatcgtgaagccctggccgccgaactgatcgaccggttcgggcccctg
ccggacgaggcgcagcagctgctgaagatcgtcggcgtcaaggccaactgtcgccgggcc
tgtatcgagaagatcgacattgggccgcgcggcgcggtgctgaccctgcgcgacaacagc
ttccccaatccggtcggactggtcggcctgatccagaagaaccacgccttctggaagatc
cggcccgatcagaagatcgttgtgacgggggactggccgacggccgaagaccggctgaag
gtggcggagcggatcacggccgatctggcgcgggtggcgggggcgtaa
DBGET
integrated database retrieval system
