Brevundimonas sp. DS20: JL11_16205
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Entry
JL11_16205 CDS
T04101
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL11_16205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brd03400
]
JL11_16205
DNA repair and recombination proteins [BR:
brd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL11_16205
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JL11_16205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA_22
Kinesin
eIF3_p135
SWI2_SNF2
DUF87
Microtub_bd
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALJ09707
LinkDB
All DBs
Position
3301656..3304013
Genome browser
AA seq
785 aa
AA seq
DB search
MNRSSTPKPAAAKPAKPVPAKPVHVPDPGVREAAAAFIRDTGKMPMFAPATGPRLTPEEP
VAAPADWVPHRPSREGAKKGGRFRLETKYTPAGDQPAAIAELVAQAEAGDRDQVLLGVTG
SGKTFTMAKVIEQTQRPALILAPNKTLAAQLYSEFKSFFPDNAVEYFVSYYDYYQPEAYV
PRTDTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLK
VGDQIDEAKLRADLIALQYKRNDLNFERGMFRKRGDVIEIFPVHLEDRAWRLSLFGDELE
AIQEFDPLTGKKTADLNEITVYAASHYVTPRPTLNQAITGIKAELKETLDWMVENGKLLE
AQRLEQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHV
TIGQINGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFEEWDAMRPQTIHVSATPGPWEME
RAGGVFVEQVIRPTGLIDPPVEIRPVSGATRNQVDDVIDEVKATTAKGYRSLVTTLTKKM
AEDLTEYMHEQGIRVRYMHSDVDTLERIEILRDLRLGAFDCLIGINLLREGLDIPECGLV
AILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRRERQMAY
NAEHGITPESVKRDIKEILDSPYESREMDRLTRPGVAEASKPFVGSNFQAALKDLEGRMR
EAASNLEFEEAARLRDEIKRMKLLDLEFANEALTGAGEEVDRSAPKKWRREAAAEKAEAF
RKGRG
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgttcttcgacgccgaagcccgctgcggccaagcccgccaagcccgtccccgcc
aaacccgtccatgtgcccgatcccggcgtgcgggaggcggcggccgccttcattcgcgac
accgggaaaatgccgatgttcgccccggcgacgggtccgcgcctgacgccggaggagccg
gtcgccgccccggccgactgggttccgcaccgcccctcgcgcgaaggggccaagaagggc
gggcgcttccggctggagacgaaatacacccccgccggcgatcagcccgccgccatcgcc
gaactggtggcccaggccgaggcgggcgaccgggatcaggtgctcttgggcgtcaccggc
tcgggcaagaccttcaccatggccaaggtcatcgaacagacccagcgcccggccctgatc
ctggcccccaacaagactctggcggcccagctctattccgagttcaagagcttcttcccg
gacaatgcggtcgaatatttcgtcagctactacgactattatcagcccgaggcctatgtc
ccgcgcaccgacacctatattgagaaggacagctcgataaacgagcagatcgaccggatg
cggcactcggcgacgcgggcgatactggagcgggatgatgtgatcgtggtggccagcgtc
agctgcatctacggcatcggctcggtcgagacctatacggccatgaccttcacgctgaag
gtgggggaccagatcgacgaggcgaagctgcgggccgacctgatcgcgctgcagtacaag
cgcaacgacctgaacttcgaacgcggcatgttccgcaaacgcggcgacgtgatcgaaatc
ttcccggtccacctggaggaccgcgcctggcgcctcagcctgttcggcgacgagctggag
gcgatccaggagttcgaccccctgaccggcaagaagaccgccgacctgaacgagatcacc
gtctacgccgccagccactatgtgaccccccgccccacgctgaaccaggcgatcaccggc
atcaaggccgagctgaaggagacgctggactggatggtcgagaacggcaaactcctcgaa
gcccagcggctggagcagcgcacccgtttcgacctggagatgatggaggccaccggcagc
tgcgccggcatcgagaactattcccgctggctgaccggccgcgcccccggcgagccgccg
cccaccttcttcgaatacatccccgacaacgccctgctgttcgtggacgagagccacgtc
accatcggccagatcaacggcatgttccggggcgactaccgccgcaagtcgaccctggcc
gaatacggcttccgcctgccctcctgcatcgacaacaggcccttgaagttcgaggaatgg
gacgccatgcgcccccagaccatccacgtctcggccacccccggcccctgggagatggag
cgggccggcggcgtcttcgtggagcaggtcatccgccccaccggcctgatcgaccccccg
gtcgagatccgcccggtctcgggcgccacgcgcaaccaggtcgacgacgtcatcgacgag
gtcaaggcgacgacggccaagggctatcgcagcctggtcaccaccctgaccaagaagatg
gccgaggacctgaccgaatatatgcatgaacaggggatccgcgtccgctacatgcactcc
gacgtcgacacgctggagcggatcgagatcctgcgcgacctgcgtctgggcgcctttgac
tgtctgatcggcatcaacctgctgcgcgaggggctggacatccccgagtgcggcctggtc
gccatcctggacgcggacaaggagggcttcctgcgctccgagaccagcctgatccagacc
atcggtcgggccgcgcgcaacgtcgacggccgcgtcatcctctacgccgaccgcatgacc
ggctcgatggagcgcgccatcgccgagaccgaccgccgccgcgaacgccagatggcctat
aacgccgaacacggcatcacgcccgaaagcgtcaagcgcgacatcaaggaaatcctcgac
agcccctatgagtcccgcgagatggaccgcctgacccgccccggcgtggccgaggcctcc
aaacccttcgtcggctccaacttccaggccgccctcaaggacctggaaggccgcatgcgc
gaggccgcctccaacctggagttcgaggaagccgcccgcctgcgcgacgagatcaagcgc
atgaagctgctggacctggaattcgccaacgaggccctgacgggggctggcgaggaggtg
gaccggtcggcgccgaagaagtggcgcagggaggcggcggcggagaaggcggaggcgttc
aggaaggggcgggggtag
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