Borrelia recurrentis: BRE_630
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Entry
BRE_630 CDS
T00769
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bre
Borrelia recurrentis
Pathway
bre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRE_630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bre03400
]
BRE_630 (mfd)
Enzymes [BR:
bre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRE_630 (mfd)
DNA repair and recombination proteins [BR:
bre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRE_630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
UB2H
Cas3-like_C_2
TsaE
Motif
Other DBs
NCBI-ProteinID:
ACH94852
UniProt:
B5RPW8
LinkDB
All DBs
Position
complement(669740..673117)
Genome browser
AA seq
1125 aa
AA seq
DB search
MNIEKELTTKLKNNQNLQKMQKFIEQNIHFTLTGYEKFFKAFLIHKIKKYSNNKVILIVK
NENISDEIKNDLTQITDQIYELNYFSPLIYKGIGSKSKVFCDRVKFLINFYENNPGIYIV
SLKSLLSKIPTKKDLFNNIYKIQTDKIINIENFEKKLIKMGYEKTMRVTLPGEFTINNKI
IDIHSFNHKEPTRISLNNDKIKQINYFNPLNQLKQKNAIYEFNIIPKKEIIWNKENIDKL
KNYIKESEYKQFFKQIETKYNARTEEVFYPLLGETLLSQEINENTITINFEIPNLKEEIK
QIYKEYDRLYTQAIESDLKIVSPKEIFINPNDLKLKTNIYFIKTPINQQTEKPTKEIIEF
KIESERRFFSNIILAKQEIQNWIDNGFQVIITAESNSQKEKLKYIFQDIPKIKVEVIKIS
SSLIINEEKIAIITEADIFNKKQKTNKTFESSKTKPIDSFIEIEKNSHIVHINHGIGIFR
QIKRIKTSLIEKDYIEIEYADNEKLFIPIEQTHLIQKYIGNETQNIKLDRISSKTWEKKK
VYATKKIDKIADQLVSLYAERENITGFQYPQDDEWQLLFESEFPYDETPDQLTAISEIKQ
DMMSSKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSPTTILTEQHFNTFKKRFK
NFPIQIAMISRFITKSKEKEILRNLETGNIDIIIGTHKILSKKITYKDLGLIIIDEEQRF
GVKEKEKLKEIKVSVDSLVLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVEEFS
EILIKHAIENELSRDGQVFFVHHNIQELDSIKAMIEKVVPYARIATIHAKLTGEQIENIM
QDFINKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLYQLRGRVGRSSKKAFAYF
LYKENSNLNEGAIERLRAISEFSELGAGFQIAMKDMEIRGVGNLLGREQHGEIESIGLDY
YLTMLNKAIEKRMGKNSKKNEINIEINYNGFIPNSYINNEQHKISIYKKISAIQSEEENN
KIRSEIYDRFGPIPNELNSLLILSELKLLAQKLNITSLKERNGLLEIEYLDINSIPAEKI
MKIIKDNPNILKLNQEYQNSVFLNLGNIKETDKINWIYKNLYLLL
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaaaagaattgaccacaaaattaaaaaacaatcaaaatttacaaaaaatg
caaaaatttattgaacaaaatatacattttacactaacaggatacgaaaaattttttaaa
gctttcttaattcacaaaataaaaaaatatagtaataataaagttatactaatagttaaa
aatgaaaatatatcagatgaaattaaaaatgatttaacacaaatcacagatcaaatatac
gaacttaattacttcagccctcttatatacaaaggaattggctcaaaaagtaaagttttc
tgtgatcgagtaaaatttttaatcaacttttatgaaaataatcctggcatatatattgtt
tcattaaaatccctacttagtaaaattcctacaaaaaaggatctatttaataacatatat
aaaatccaaacagataaaataattaacatagaaaattttgaaaaaaaacttataaaaatg
ggatacgaaaaaacaatgagggttacattacccggagaatttacaataaataacaaaata
atagatatacattcatttaatcacaaagaaccaacaagaatttcacttaataatgacaaa
ataaagcaaatcaattatttcaatcccctaaatcaattaaaacaaaaaaatgctatttat
gaatttaacataattccaaaaaaagaaataatttggaacaaagaaaacatagataaatta
aaaaactacatcaaagaatctgaatataaacaattctttaaacaaattgaaacaaaatac
aacgcaagaacagaagaagtattttatccattattaggagagactctcttaagtcaggaa
ataaatgaaaatacaattactataaattttgaaataccaaatttaaaagaagaaatcaaa
cagatatataaagaatacgataggctctacactcaagcaatagaatcagacctaaaaata
gtatcaccaaaagaaatctttataaatcccaacgatttaaaattaaaaaccaatatatat
tttataaaaactcctataaatcagcaaacagaaaagccgacaaaagaaattatagaattt
aaaattgagagcgaacgtagatttttttcaaatattatacttgcaaaacaagaaatacaa
aattggattgataatggatttcaagtaattattacagcagaatccaactcacaaaaagaa
aaattaaaatacatttttcaagacatacctaaaatcaaagttgaagttattaaaatatca
agctctcttataataaacgaagaaaaaatagctattattactgaagcagatatttttaac
aaaaaacaaaaaacaaataaaactttcgaatcatcaaaaacaaaacctatagattcattt
attgagattgaaaaaaatagtcatattgtccatataaatcatggaattggaatatttaga
caaataaagagaatcaaaacaagtcttattgaaaaagactatattgaaattgaatatgct
gataatgaaaaattatttattcctattgaacaaacacaccttattcaaaaatacattgga
aatgaaactcaaaatataaaactagatagaatcagttcaaaaacctgggaaaagaaaaaa
gtttatgcaacaaaaaaaattgataaaattgcagatcaacttgtttcactttatgcagaa
agagaaaatattacaggatttcaatatcctcaagatgatgaatggcaattattatttgaa
tcagaatttccatatgatgagactccagatcaattaacagcaatatctgaaatcaaacaa
gatatgatgagttcaaaagtaatggacagacttttatgcggagacgttggatttggaaaa
actgaagttgcaatgagagcagcatttaaagctgttatggggaaaaaacaagtagcaata
ctatctccaacaacaattcttacagaacaacacttcaatacatttaaaaaaagatttaaa
aatttcccaattcaaattgcaatgattagcagatttataacaaaatcaaaagaaaaggaa
attcttcgcaatttagaaacaggaaacattgacataataattggaacacataagatacta
tcaaaaaaaataacatataaagatttgggtctcattattattgatgaagaacaaaggttt
ggtgttaaagaaaaagaaaaactaaaagaaataaaagtctctgtcgattctcttgtatta
tcagcaactcctattcctcgttctcttcacatgtcattaatcaaactaagagacatttct
gttttaaaaactccaccccaaaacagaattaaaatagaaacttacgttgaagaatttagt
gaaatattaattaaacatgcaatcgaaaatgaactatcaagagatggacaagtttttttt
gtacaccataatattcaagaactagattcaataaaagcaatgatagaaaaagtagtccct
tatgcaagaattgcaactatccatgcaaaacttacgggtgagcaaattgaaaacattatg
caagattttataaataaatcatatcaagtattactagcaacaacaattattgaaaatgga
atagacattgaaaatgcaaatacaataatcatcaacaatgcaaatagatttgggcttgca
caattataccaactaagaggaagagttggcagaagttcaaaaaaagcatttgcttatttt
ttatataaagaaaattcaaatctcaatgaaggtgccattgaaagactaagagcaatatct
gaattttcagaacttggagcaggatttcaaattgcaatgaaagacatggaaataagaggc
gttggtaatttacttggaagagaacaacacggagaaattgaatctattggactagattat
tatttaacaatgctaaataaagcaattgaaaaacgtatgggaaaaaattcaaaaaaaaac
gaaatcaacattgaaatcaattacaatggatttatccctaatagctatataaataatgaa
caacataaaatatcaatttacaaaaaaatttcagcaattcaaagtgaagaagaaaataac
aaaataagatctgaaatttatgatcgatttggaccaattcctaacgaactaaatagccta
cttattttatcggaactaaaattacttgcacaaaaacttaatattacaagccttaaagaa
agaaatggattacttgaaattgaatatttagacataaatagcattcctgcagaaaagatc
atgaaaattattaaagacaatcctaatatcttaaaattaaatcaagaatatcaaaactcg
gtttttctaaatttaggaaatattaaagaaacagataaaataaattggatatacaaaaat
ttgtatctattattataa
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