Brevibacterium sp. BDJS002: PGC08_11625
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Entry
PGC08_11625 CDS
T10203
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
breb Brevibacterium sp. BDJS002
Pathway
breb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
breb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGC08_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breb03019
]
PGC08_11625
03009 Ribosome biogenesis [BR:
breb03009
]
PGC08_11625
Enzymes [BR:
breb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGC08_11625
Messenger RNA biogenesis [BR:
breb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGC08_11625
Ribosome biogenesis [BR:
breb03009
]
Prokaryotic type
rRNA helicases
PGC08_11625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Cas3-like_C_2
UvrA_inter
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WCE38668
LinkDB
All DBs
Position
2477024..2478844
Genome browser
AA seq
606 aa
AA seq
DB search
MTDVSSSDDPTTPKFSELGLHPLVLQAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTG
TGKTAAFALPALSDLAEAGRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIY
GGQAYGPQLSGLKRGAQVVVGTPGRVIDHLKKGSLRLGSLRHLILDEADEMLKMGFAEDI
EEIFSQSGDSRQVALFSATMPTSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRYHMVQHS
HKLDALTRILEVEEYEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDM
LRNGKVDILVATDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVT
PREQRLLGSIERATKQKVEQLKMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQY
ELSRNVPATDIAAALASLVLESNTLKADPMPEPSRGKPARDRDSGGRDGKPGRERSSRPR
DENMTTYRLAIGRNERLQPGAVVGAIANEGGLTSKEIGHIDIRSNHTLVDLPKDLDSSVM
RKLSNTQIQGRPIDIRPDSGRPARPFKKRNFDKQPGDSRNFRNDRRGGAKKFSNDRFGGE
RSHDRY
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtgtcctcatccgacgatccgacaacaccgaagttctccgagctgggtctc
cacccgctcgtcctccaggcagttcaggctcagggttacgaaaccccgaccccgatccag
gccgaaacgattcccgcactggtcgaaggccgcgacgtcatcggactcgcccagaccggt
accggcaagaccgccgctttcgccctgccggcactgtccgacctcgccgaggcgggtcgc
gccaatgacggccccttcgctctcgtactgacccccacccgtgagcttgcaatccaggtc
gccgaggcgttcacctcctatgcgacgaacctcgacgacttctccgtcctcccgatctac
ggcggccaggcctacggcccgcagctgtccgggctcaagcgcggcgctcaggtcgtcgtg
ggaacgcccggtcgtgtcatcgaccacctcaaaaagggctccctcaggctcggcagcctc
cgtcacctcatcctcgatgaggccgacgagatgctcaagatgggcttcgccgaagacatc
gaagagatcttcagccagtccggtgactcacgtcaggtggctctgttctccgccaccatg
ccgacctcgatccaccgcctgaccggcaagtacctcaacaaccccaaagaggtgcgggtc
gcgtcgaagtcgcagaccggatcgaacatccgtcagcgctaccacatggtccagcactcc
cataagctcgacgccctgacccggatcctcgaggtcgaggagtacgagggcatcatcatg
ttcgtccgcaccaagcaggccacggaggagctcgcggagaagctgcgtgcccgcggcttc
aaggcctcggcaatcaacggcgacattccccagcaggcccgtgagcgcacgatcgacatg
ctgcgcaacggcaaggtcgacatcctcgtcgccaccgacgtcgcagcccgcggcctcgac
gtcgagcgcatcaccctggtcgtcaacttcgacattcctcacgacaccgagtcctacgtc
caccgcatcggccgcaccggccgcgccggacgctcaggtgaggccattctcttcgtcacc
ccacgtgagcagcgtctgctcggctccatcgagcgcgcaacgaagcagaaggtcgaacag
ctgaagatgcccagcgtcgaagagctgacgaacacccgtgtggagaagttcacgaagcgc
atcgacgatgtgctcgcaacgaccgagctgaccgagctcgcgaccgtcatcgaacagtac
gagctctcccgcaacgtgcctgcgaccgacatcgccgcagcgctggcgtcgctggtgctc
gagtcgaacaccctcaaggccgatcccatgccggagccttcgcgcggcaagccagcccgt
gaccgtgacagcggcggacgcgacggcaagcccggccgtgaacgctcatcccgtccgcgt
gatgagaacatgaccacctaccgtctggcgatcggacgcaatgagcgtctgcagcccggt
gcggtcgtcggcgccatcgccaacgagggtggtctcacctcgaaggagatcggccacatc
gacatccggtcgaaccacacccttgtcgatctgcccaaggatctcgattcctcggtcatg
cgcaagctctccaacacccagatccagggccgcccgatcgacatccgtccggattccggc
cgtccggctcgtccgttcaagaagcgcaacttcgacaagcagcccggcgacagccgcaac
ttccgcaatgatcgccgcggaggcgccaagaagttcagcaatgaccgcttcggcggcgaa
cgctcacacgaccgctactga
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