Brevibacterium sp. BDJS002: PGC08_12780
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Entry
PGC08_12780 CDS
T10203
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
breb Brevibacterium sp. BDJS002
Pathway
breb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
breb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGC08_12780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breb03019
]
PGC08_12780
Messenger RNA biogenesis [BR:
breb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PGC08_12780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Phosphatase
Motif
Other DBs
NCBI-ProteinID:
WCE42024
LinkDB
All DBs
Position
complement(2767597..2769243)
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AA seq
548 aa
AA seq
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MDAEAVRIVALGGLGEVGRNMTVFEYHGKLLIVDCGVLFPEEDQPGVDLILPDFAYLDDR
LDDIVGLVLTHGHEDHIGAVPYLLRRKADIPILGSNLTIALIEAKLKEHRIKPITRVVKE
NDLDQLGPFDLEFVAVNHSIPDALAVFIRTGAGNILHTGDFKMDQLPLDGRITDLRAFAR
LGEEGVDLFMTDSTNAEVPGFTALEKDIGPVLENLFGHAERRVIVASFSSHIHRVQQVLN
AADAHGRKVALVGRSMVRNMKIAEDLGYLEVPRGALIDIKEVDKLPDDQVVLMCTGSQGE
PMAALSRMANRSHRVEVGDGDTVILASSLIPGNENSVFKVINGLMKLGAQVITKADAKIH
VSGHASGGELLYCYNIVKPRGVMPVHGEWRHMLANARHAEATGVNPDNIVLADDGWVVDL
KDGHAEVVGAVDCNFVFVDGSSVGEITEADLKDRLVLSGEGFVTIFMAINSQSKSLIAGP
EIHARGVAESDSVFDSIMPKVTKAVEDALKDGNTDQYQLQQVVRRTVGRWASSKLRRKPM
IVPMVVIV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggaagccgtccgcatcgtcgccctcggcggcctcggcgaagtcggccgcaac
atgaccgtgttcgaataccacggcaagctgctcatcgtcgactgcggcgtcctcttcccg
gaggaggatcagcccggcgtcgacctcatccttcccgacttcgcctacctcgacgatcgc
ctcgacgacatcgtcggcctcgtcctcacccacgggcacgaagaccacatcggagccgtg
ccctacctgcttcgccgcaaggccgatatcccgatcctcggttcgaacctgacgatcgct
ctcatcgaggccaagctcaaggaacaccggatcaagccgatcacccgcgtggtcaaggag
aacgacctcgatcagctcggtcccttcgacctcgagttcgtcgccgtcaaccactcgatt
cccgatgctctcgcggtcttcatccgcaccggtgcgggcaacatcctccacaccggcgac
ttcaagatggaccagctcccgctcgacggccggatcacggacctgcgcgccttcgcccgc
ctcggcgaggaaggcgtcgacctgttcatgacggactcgacgaacgcggaggtccccgga
ttcaccgctctggagaaggacatcgggccggttctcgagaacctcttcggtcacgccgag
cgccgggtcatcgtcgcctcattctcctcacacatccaccgcgtccagcaggtgctcaac
gccgcagacgcgcacggtcgcaaggtcgcactcgtcggccgttcgatggtgcgcaacatg
aagatcgccgaagacctcggctaccttgaggtcccgcggggtgctctcatcgacatcaaa
gaggtcgacaaacttcccgatgaccaggtcgtgctcatgtgcaccggttcgcagggtgag
ccgatggcggccctgtcacgcatggccaaccgcagccaccgcgtcgaggtgggcgacggc
gacaccgtcatcctcgcctcctcactcatccccggcaacgagaactccgtgttcaaggtc
atcaacggactgatgaagctgggcgcccaggtgatcaccaaggcagacgccaagatccac
gtgtccggacacgcctccggcggcgagctgctctactgctacaacatcgtcaagccccgc
ggagtcatgcccgtccacggtgaatggcgacacatgctggccaacgccaggcacgccgag
gcgaccggagtgaacccggacaacatcgtcctcgccgacgacggctgggtggtcgacctc
aaggacggccacgccgaggttgttggtgcggtggactgcaacttcgtattcgtcgacggc
tcctcggtcggcgagatcaccgaggcggacctcaaggaccgtctcgtgctctcgggcgaa
ggcttcgtcacgatcttcatggccatcaacagccagtccaagtccctcattgccggtccc
gagatccatgcccgtggtgtggccgagtccgattctgtcttcgactcgatcatgccgaag
gtcacgaaggccgtcgaggatgcactcaaggacggcaacaccgaccagtaccagctgcag
caggtcgtgcgccgcactgtgggacgctgggcgtcctcgaagctgcgtcgcaagccgatg
atcgtccccatggtcgtcatcgtctga
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