Brevibacterium sp. BDJS002: PGC08_12880
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Entry
PGC08_12880 CDS
T10203
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
breb Brevibacterium sp. BDJS002
Brite
KEGG Orthology (KO) [BR:
breb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
breb03016
]
PGC08_12880 (truB)
Enzymes [BR:
breb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PGC08_12880 (truB)
Transfer RNA biogenesis [BR:
breb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PGC08_12880 (truB)
Prokaryotic type
PGC08_12880 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
DKCLD
PseudoU_synth_2
NAR2
Motif
Other DBs
NCBI-ProteinID:
WCE38900
LinkDB
All DBs
Position
complement(2790809..2791726)
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AA seq
305 aa
AA seq
DB search
MSDTSPQGVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKL
LGYITGVSKTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQ
VPSAVSAIKVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCS
SGTYVRALARDLGGSLGVYGHLTALRRTRVGAFSLDEAVMIPDDLDIEAPALTSLAEVAR
TLLPTVHVDSVEAKALMQGKTIGTDRSPDQGNDVAVIVGEELVSIAEVRAGGVLKSQTAF
AIDLA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatacttccccacagggtgtcattgtctgtgacaagccccaaggcctgacttcc
cacggcgtcgtctctcggattcggcgctggtacggcacccgcaaggtcgggcatgccgga
accctcgaccccatggccacgggcgtgctcgttctcgggctgggccgcgggaccaaactc
ctgggctacatcaccggtgtgtccaagacctatctggccacgatccgtctcggctcggcc
acgccgaccgatgacgcggactcggagccagacctcttcgccgagcctgcggcactgtcg
gcggtcaccgatgatgggatcgcacacggcgtctcagccttgcgaggctccatcgaccag
gttcccagcgcggtctccgcgatcaaggtcaacggccaacgctcctacgcccgcgtccgt
gccggtgaagacgttgtgctcaaggcgcgccgagtcgagatctcagacttcaccatcctc
gccacccggtactccgttgcgcagggccacatcgatgtcgacgtcgaagtcgactgctcg
tcggggacctatgttcgtgcactggcgcgagacctcggcggcagcctcggcgtctatggt
catctcaccgctctgcggcgcactcgagtgggcgccttcagcctcgacgaagcggtcatg
atccccgatgatctcgacatcgaagcacccgcgctgacctctctcgccgaggtggcccgg
accctgcttccgaccgtgcacgtcgattccgtggaggccaaggccctgatgcagggcaag
acgatcggcaccgatcggagcccggatcagggcaatgatgtggccgtgatcgtcggcgag
gagctcgtctctatcgccgaggtgcgagccgggggagtgctgaaatctcagacggccttc
gccatcgacctcgcctga
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integrated database retrieval system
