Brevibacterium sp. BDJS002: PGC08_15450
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Entry
PGC08_15450 CDS
T10203
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
breb Brevibacterium sp. BDJS002
Pathway
breb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
breb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PGC08_15450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
breb03400
]
PGC08_15450
Enzymes [BR:
breb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PGC08_15450
DNA repair and recombination proteins [BR:
breb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PGC08_15450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WCE39381
LinkDB
All DBs
Position
complement(3333271..3335778)
Genome browser
AA seq
835 aa
AA seq
DB search
MSGHEQKVTVDGHRLTLTNLDKVFYPETGTTKGEVLDYYARIHEHLIRHAHDRIATRKRW
VDGVGTPKKPGKVFFEKNLPESAPSWIACRSIRHSTGSKSYPLVQDRATLTYLAQMASLE
IHIPQWQVAKGSSDPGTIDSTSRHPDRMVFDLDPGPGRGLADCVEVAQLVRELLTGMNLD
VYPVTSGSKGIHLYAPLDATATSQQISDVAHELARSLESDHKDLVVSAMKKTLRENKVLI
DWSQNSAAKTTVAPYSLRGRFTPTVAAPRTWDELDDPDTIEQLRFEVVLDRIDDLGDLLE
PLAKTSGESTNPSLTSAAPRDRLDIYRSKRDPKRTSEPVPDSHGASGDELTFVIQEHHAS
SLHWDFRLEHEGVLVSWALPKGPPTDPKHNHLAVQTEDHPLEYGSFEGTIAKGQYGAGEV
TIWDSGTYELEKWKEGSEIIAVLHGAADGGLGGVRRFALFNTGEHGPNKEPEKNWMIHLT
KDSSKDSSKGSPRRGALSSAPENSEHTMSEPAEPTDLAPMLASIGDIDAVRRQTEDWAFE
MKWDGIRALASVRAGMHDSSGSIALTSRNGHDMTETYPELIELAACVDVDCVLDGEIVAL
GPDSRPDFGRLQRRMGLTRERDIARERERTPVHLMVFDVLHADGSSLLKSTYVDRRERLS
ELVTEGKHIHVPSAIEGTIDEAMQASRDLELEGVMAKKTDSIYLPGRRTHTWAKLKHSST
RDVIIVGWRTGKGERSEAFASLLLAAYDKGELVYLGRVGTGFDEHQLRKLRAKLDQLTRK
TPPLDVPSAESRDAQWVRPSLVSEVQYGGITEAGRLRHPVWRGLRADIDPKEVIA
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtcatgaacagaaggtcaccgtcgacgggcatcggttgacactgaccaatctc
gacaaggtcttctatccggagacgggcacgaccaagggtgaggtgctcgactactacgcg
cgcatccatgagcatctgatccggcacgcccatgatcgcatcgccacccgcaaacgctgg
gtcgacggcgtcggcacccccaagaagccgggcaaggtgttcttcgaaaagaacctgccc
gaatctgccccctcgtggatcgcctgccgctccatccgtcactccaccgggtccaagagc
tacccgctggtccaggatcgtgcgactctgacctaccttgcgcagatggcgtcactcgag
atccacattccccaatggcaggtcgcgaaaggctcgtctgaccccggcaccatcgactcg
acgagccggcacccggaccgcatggtcttcgatctcgaccccggtccgggacgtggtttg
gctgactgcgtcgaggtcgcccagttggtgagagaactgttgaccggaatgaacttggac
gtctacccggtgaccagcggctccaaaggaatccacctctatgcgccgctcgacgccact
gcaacgagtcagcagatttcagatgtcgcccacgagttggcacgcagtctcgaatccgat
cacaaagacctcgtcgtttcagcgatgaagaagacgctccgtgagaacaaggtgctcatc
gactggtcccagaattcggcagcgaagacgacggtcgcaccctattcgctgcgcggccgg
ttcactcccaccgtggcggcaccacgcacatgggacgaactcgacgacccggataccatc
gagcagctgcgcttcgaagtggtgctcgacaggatcgacgacctcggcgacctgctcgaa
ccgttggcgaaaacttcgggggagtcgacgaacccatcgctcacctcggcagcaccccgc
gaccgcctggacatctaccgatcgaagcgtgacccgaagcgcaccagtgaaccggttccc
gacagccacggagccagcggggacgagctcaccttcgtcatccaagaacaccacgccagc
tcgctgcactgggacttccggctcgaacacgaaggcgtgctggtctcctgggcgctgccg
aaagggcctcccaccgacccgaagcacaaccacctggcggtccagaccgaggatcacccc
ctcgaatacggaagcttcgagggcacgatcgcgaagggccaatacggtgccggtgaggtc
acgatctgggactcagggacctacgagcttgagaagtggaaagagggcagtgagatcatc
gccgttctccacggagccgccgatggcggactcggaggagtgcgacgatttgcactgttc
aacaccggcgagcacgggcccaacaaggaacccgaaaagaactggatgatccacttgacc
aaggactcgtccaaggactcatccaaaggttcgccgaggcggggcgccctttcgtccgca
cctgaaaattccgagcacaccatgtccgaaccggccgagcccaccgacctggctccgatg
ttggccagcatcggagacatcgatgccgttcgccgacagaccgaggactgggcgttcgaa
atgaagtgggacggcatccgcgcgctcgcctccgtgcgtgccggcatgcacgattcgtcc
gggtccatcgcgctgaccagccgcaacggccacgacatgacggagacctaccccgaactc
atcgagctcgccgcgtgcgtggacgtcgattgcgtcctcgacggtgagatcgtggcgctg
ggcccggacagccgtcctgacttcgggcgtctgcagcgcagaatgggcctgactcgagag
cgcgacatcgcccgagaacgcgagcgcaccccagtgcatctgatggtcttcgacgtattg
cacgccgacggttcctccctgctgaagtccacatatgtcgaccgccgcgaacgactgagc
gaactcgtcaccgagggcaagcacatccatgtgccctccgcgatcgaaggaaccatcgac
gaggcgatgcaggccagccgcgacctcgaacttgaaggggtcatggcgaagaagaccgac
agcatctacctgccgggcaggcgaacccacacctgggcgaaactcaaacattcctccact
cgcgacgtgatcatcgtcggatggcgcaccggcaagggagagcgctccgaggccttcgcc
tccctgctgctggcggcttatgacaagggcgaactggtctatctgggccgcgtcggtacc
ggtttcgacgagcaccagctgcgaaagcttcgggccaagcttgatcagctgaccaggaag
acgccaccactggatgtcccgtccgcggaatcgcgcgatgcccagtgggtgcggcccagc
ctcgtcagcgaagtccaatacggaggaatcaccgaggcgggtcgtctccgccatcccgtg
tggcgcgggctgcgggccgacatcgaccccaaggaggtcatagcctag
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