Balearica regulorum gibbericeps (East African grey crowned-crane): 104638581
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Entry
104638581 CDS
T09009
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
breg
Balearica regulorum gibbericeps (East African grey crowned-crane)
Brite
KEGG Orthology (KO) [BR:
breg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
breg03021
]
104638581 (SETX)
Enzymes [BR:
breg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104638581 (SETX)
5.6.2.5 RNA 5'-3' helicase
104638581 (SETX)
Transcription machinery [BR:
breg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104638581 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
nSTAND3
ResIII
Motif
Other DBs
NCBI-GeneID:
104638581
NCBI-ProteinID:
XP_010304709
LinkDB
All DBs
Position
Unknown
AA seq
2811 aa
AA seq
DB search
MSTCRWCTPSGSDATEFLKSYASKRLSPEDLEGSNDDLCYCLECVVEYHKAREKLPRLHE
VLWELETSRLVAHIEKSMQEEAGEDDELFIVDENGETQLTAYVGPEFENNLRVPLLEILK
YPYLLLHERVSELCVEVLCRMEQSHNSFYVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSMFEKGKLILLPSHLYDTANYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFKRTKSEPESDYDDDMVTCSQIVYN
YNTEKPQKDTGWKTAICPEYCPNMYEDMQTLANVLQSDIGKDMRVHDSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILNERVLQCDKISEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCVKLPAIAFTRCTEKASGHSVRGSSAVSLQASNSVQHACVQLIRSLL
REGYQIGQYALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQMCLKQVVRSIKDRALNTP
VPVGNNANSTTFPAVSIKQEKSARGDECKMSVCGRDDPCPPLAVISQEGGDENCQGNLLP
RRKSAWEEECRDVSKTSKTWTSTEGLSVNIKKEFNDLPTQEYVCPQNSLATKVCRKVQEN
RNNDLVAGKRDTDNQCFNPNAQHSDFRRGGELENKCEAGSIAPMRLAAQTRMGSPERVYS
LDAEESNVSPSSSSKFKVDVHRLTSLKNKIQKTEWHLKVSQLVKPHYLENCSLATSASKA
EVEQPNFCTGSLCTSKDCHKHQGVNMVCESEISVDTPSSRRFESAQEKSVNSAFQSRLVP
TKQVSKETPLDCSSSSKNEPDIQENEDDSVLFSGISDTLLKKLSTEEKSNSLLKDTDMQS
SDREQPNLNDLVKYDCKGQISKTFCMDKTSANGRVPSSSENKRDISSPASQIRPLSMKCE
SSDRLFEFSKYFKRENNSVRKKEEDFVKMASEDNTLTDSQVDRELSKLSLAAYAKSVNFS
FDSSQESSVYHNVCDIKRKVKGAVRSSSDGQSTKSPSDADCLDNEVIIISDSSDEEKGVA
DEETKKLNENVCPEKQPSTPDSDTKIESKTPSCTLSLEDCDSQYFEFETEEEVFSVWQDT
QAYNMEATQEYKQDRVSTSDGSSNSDGLLNDHTNEWGYDVDYVSDDVMEEEANLIEKQIE
NISHQKEADNTKVVTNSPLQESISKENAKDQLENFVDKGAVTEDFTVDSKLTEPRASTSN
ISLASKLALKKNSASPRKNIAKSKVARTVQRSPKKPPVLKTAQNKKLLQSTLKNSQPGRS
MPAVVPPRKVRQYPAPASTVEKLGLKKAPRKAFELSQRSLDSLAQLRSHGKAAGRVGVAQ
KQKIKLIAPQSLSIKNNKKMLACQDLQFLRQTRPKKSVRVKNLAGSSESRNKKVSKVDAK
SMKQKPKSFVLTSVEGSVENQRGEKREDTVCPFASERKFESHSVEEPPCLSKMPNSSDLS
RKSEDNSVMVPPVPMDSSLSSAALVGDDKDELSGKGCIVQPECEKTTSKENGSKPNENSE
DDDDLFLTQLDPVDMELCSEEETVQDTPVVSKKTEEMDTAESLQQNESLTIVKCKYKECM
EKVEKPGECCSKHSAASSEEDHLFAKPSLLPPKTRKPSTTKIFSLASSSRNAAFSKDLED
GTKLPPASKSKVNAAKPVLVRPSNAKAVPVGNQICKSPSFSNVPQPCISNNVLQSCNRQN
DNASNIPRRPAREVCYSSFLGAQQRDHSIFVNEVLKWTYEMFSSSSQFGTPSNLLQSVVA
SVPVQFQGYNDYFNTFFPLMMLNAFETLAQEWIENQRVREKSYYFYLQNFSADLNTADFT
AHFRESDLARQLHPREDDLIFLVVQKKKDTFREESEMENHTVNHVGLVTRFSRASGCLTR
QKEQHTVCHLSVKTRGNLSFFVNKQVKCVVVGSLVTTHRTFKGLLLLSRSPLAKPIINPS
YNDFCPRDLPVVPESAASDMDEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSK
TIVGLLFRVLRQNTRNEKATQKTNSKIKPNRFLVCAPSNAAVDELMKKIIVAFKEKCQNR
QEPLGNCGDIKLVRLGAEKAINSEVRGFSLDKQVEHRMKRKPADCDQDIQKKKAALDQQL
DMLSRQRAMHRCEKKESQLLDDEIGRLSKERQQLASQLKEVRGHSQKVQVDIILESDIIC
CTLSTSGGSLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLP
PTVKSVKAQEYGYDQSLMARLHRHLEEQVQKNVLRSLPVVQLTVQYRMHPDICLFPSNYV
YGRALKTDKATEENRCSSEWPFQPYLIFDVGDGREERDNDSFSNPQEVKLVMELIRTIKE
KRKDLGLRRIGIITPYSAQKKKIQEQLDRVFKNNSPGEVDTVDAFQGREKDCIIVTCVRA
NSTKGSIGFLASLQRLNVTITRARFSLFILGRLKTLMENKDWNELIQDAQKRGAIIKTSE
KNYRKDAVKILKLRTTVQPPTKAGTKQSPLSQACSSSSKRAELVHPREASSPQELAAGAG
HAVPQGSRQLQQPQGAQAADSPGEAAGLPADQEKPRDPRLASMASRTETKGKEQASKDSS
RSGQSNPGSTSQQGLDVSSAARHHVSGTETSKKPQQTMGQRSVPSTSPYATQHEGDWRAS
VSKSSSKARSEEGQSTSSRWNKDYHVLTRRTSEELPENRDSNSAKRRKTFH
NT seq
8436 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacacctagtggttctgacgccactgagttcctgaagagc
tatgcttctaaacggttgtccccggaagatcttgaaggatccaatgatgatctctgttac
tgcctggaatgtgtggttgaataccacaaagcaagggaaaaattgccaaggttgcatgag
gtcttgtgggagttggaaacctcccgtcttgttgcccacattgagaaatccatgcaagaa
gaagctggagaagatgatgagttgtttatagtggatgaaaatggagagacacaactcact
gcttacgtgggcccggaatttgagaataacctgcgagtgccccttctagaaattctgaaa
tacccatatctgctgctgcacgagagagtcagcgagttgtgtgtagaagtgctctgtaga
atggaacaaagtcacaactccttttatgtctttgagaaatatccaggaatttatctcttt
ttggtacacccgaatgaagtgattcgtcgatgggccatcctaacagcaaggaatttaggg
aaggttgacagggacgattactatgacttacaggaagtgctgacttgcttgttcaaagtt
attgagttggggctttttgagagtccagatatttacagctcttcaatgtttgaaaagggt
aaactcatccttctcccatcgcatttatacgatactgccaactacaagaactattggcta
gggatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc
ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaggaagcagct
gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcagtagctttaagaggacaaaa
tctgaaccggagtcagactatgatgatgacatggttacttgcagtcagattgtgtataat
tacaacacagaaaagcctcaaaaggatactggatggaagactgccatttgtccagaatac
tgccccaacatgtatgaagatatgcaaacactggctaacgtgcttcagtctgatattggc
aaagatatgcgtgtccatgacagcacatttctatggttcatcccttttgttcagtctctt
atggatctcaaggacttgggtgtagcatatatagtagaggtcattcactacctctgctca
gaaatcaaagatattctcaatgaaagagtccttcagtgtgacaaaatctctgaatttttt
ctcctgatcttggtatccattattgaactacacagaaataaaaagtgcctgcatttgctg
tggattagctcccaagaatgggtggaagcggtggtgagatgtgtgaagcttccagctata
gcatttacacggtgcactgaaaaagcatctggacactctgtgagaggttcatcggcagta
tctttacaagcttctaactctgtgcagcatgcctgtgtgcagttgatacgcagccttctt
agagaaggctatcaaattgggcagtacgctctttgcaagcaatacctagacaaactcaat
cttcttctgcgaggaaatctgtctttaggctggcagctgaacatccaggaaacccaggaa
ttacaaatgtgtttaaagcaagttgttagaagtataaaggacagagcactgaatacccct
gtgcctgtaggaaacaatgcaaactctacaacttttcctgccgtttctataaagcaagag
aagagtgcccgtggtgatgaatgcaagatgagtgtatgtggcagagatgacccatgtcca
ccattagctgtcatatcgcaggaaggtggagatgaaaattgtcaagggaaccttttacct
agaagaaagagtgcctgggaagaggaatgtagagatgtatctaaaacttcaaaaacttgg
acatccacagaaggcctctcagtgaatattaaaaaggaatttaatgacttgccaactcag
gaatatgtctgcccacagaactccttggcaacaaaagtatgtaggaaagttcaggaaaat
aggaacaatgatcttgtggcagggaaacgcgatacggataatcagtgttttaatccaaat
gcccagcattccgatttcagaagaggtggagagttggaaaacaaatgtgaagcaggatcc
atagcaccaatgcgtctggctgctcaaactcgtatgggttctccagaacgtgtttacagc
ttggatgcagaggaaagcaatgtgtctcccagttcctcttcaaagtttaaagtagatgtg
catagactcacaagtttgaaaaacaagatacagaaaactgaatggcacttaaaagtatct
cagctagtaaagccacactacttggaaaactgcagtttagcaacaagtgcttcaaaagca
gaggtagagcaacctaacttttgcactggctctctgtgtacaagcaaagattgtcataaa
catcagggagtgaatatggtgtgtgaaagtgaaatctctgttgatactccatcttcaagg
cgttttgaaagtgctcaggagaaaagcgtcaacagtgcttttcaatccagactggtcccc
actaaacaggtatcaaaagaaacaccattagattgctctagctcctctaaaaatgaacct
gatatacaggaaaatgaagatgacagtgttttgttttcagggattagtgacaccttactg
aagaaactatccactgaagaaaagtcaaattccttgttgaaagacactgacatgcaaagt
tcagaccgggaacagcctaatttaaatgacttggttaaatatgactgtaaaggtcaaatt
tcaaagactttttgtatggataaaacttcagcaaatggtcgtgttccatctagctctgaa
aacaagagggatatatccagccctgcttctcagatcaggccattgtcaatgaaatgtgaa
tcaagtgacagattgttcgaattttcaaaatatttcaagagagaaaacaattcagtgagg
aaaaaagaggaggattttgtgaagatggcttctgaagataatactttaacagactcccag
gttgatagagaactcagtaaattatctttagctgcgtatgccaaaagtgtcaatttttcc
tttgattccagccaagaaagctcagtatatcataacgtatgtgatattaagaggaaagtg
aaaggtgctgtaagatcttccagtgatggccagagtaccaagtctccctctgatgcagat
tgccttgacaatgaggtcattataatttcagactcttctgatgaagaaaaaggtgtggct
gacgaggaaacaaaaaaactgaatgaaaatgtgtgtcctgaaaagcagccttcaactcct
gatagtgataccaaaatagaatcaaagacaccaagctgtactttgtcactggaagactgt
gactctcagtactttgaatttgaaactgaagaagaagtcttttcggtttggcaagatact
caagcgtataatatggaggcaactcaagagtataaacaagatcgtgtttcaacatcggat
ggtagtagtaattcagatggcttactgaatgatcacacaaatgaatggggttatgatgtg
gattacgtaagtgatgatgtcatggaagaagaagcaaacttgatagaaaagcagatagaa
aatatttctcatcagaaagaagctgataatacaaaagtagtaactaattcaccattgcaa
gaatcgattagtaaagaaaatgcaaaagatcaactggagaattttgtagacaaaggtgcc
gttactgaagacttcactgtggactcaaaattgactgaacccagagcatctacatctaac
atctcattagcttcaaagttggcccttaagaaaaatagcgcgagcccacggaagaatata
gcaaaatctaaggtagcaagaactgttcaaagaagtcctaaaaaacctcctgttcttaaa
acagcacaaaataaaaaactacttcaaagtacgttaaaaaattctcaacctggcaggtca
atgcctgctgtggttcctccgaggaaggttcggcagtatcctgcaccagcatcaaccgta
gaaaaacttggtctgaagaaggcacctcgcaaagcatttgaattatcccagcgctcttta
gacagtctagctcaattgcgcagccatggtaaagctgcagggagagttggagttgcacag
aaacagaagattaaattaattgctcctcagagtttgtctataaaaaataataagaaaatg
ctagcctgccaagaccttcagtttttaaggcagacaaggcccaaaaaaagtgtcagagtg
aaaaatcttgcaggaagttctgagagtagaaacaaaaaagttagcaaagtggatgcaaaa
tctatgaaacaaaagcctaaaagttttgtactgacatctgttgaaggatctgttgaaaac
caaagaggggaaaaaagggaggacactgtttgtccctttgccagcgagagaaaatttgaa
agccactctgtggaggagccaccatgtctctctaaaatgcctaattcttcagacttgagc
agaaaatcagaggataacagtgtgatggttcctcctgtacctatggattcaagtctctct
tctgccgcacttgttggagatgataaagatgaactttcaggaaaaggttgcattgtccag
cctgagtgtgagaaaacaacttcaaaagaaaatgggtctaaaccaaatgaaaacagtgaa
gatgatgatgatctatttttaactcagttagatcctgtagatatggaattatgttctgag
gaggaaactgttcaagatactcctgtagtgagtaaaaaaacagaggaaatggatactgct
gaaagccttcagcagaatgaatccttgactattgtgaaatgtaagtacaaagaatgtatg
gaaaaagtggaaaaaccaggagagtgctgcagtaagcattcagccgccagctcagaggag
gatcacttgtttgccaaaccttctcttctgccacctaaaacaagaaagccttccactacc
aaaattttcagcttggcaagttcttcacggaatgcagccttcagcaaggatctcgaagat
ggtacaaagctgccgccagcttcaaaaagcaaagtgaatgcggcgaaaccggtgctggtc
aggccatcaaatgcaaaggctgtaccagtaggaaatcaaatatgcaagtctccaagcttc
agtaatgtacctcaaccctgtatttccaataacgttctccagtcatgcaacagacagaat
gacaacgcttcaaatattcccagaaggcctgcccgagaagtgtgttattcttcgtttctt
ggcgctcagcagcgtgatcatagtatttttgttaatgaagtcctgaagtggacttacgaa
atgttttcaagctccagccagtttggaactccaagtaatctcctgcagtctgtagtagcc
tctgttcctgtccaatttcagggatacaatgactattttaatacatttttccccttgatg
atgctaaatgcctttgaaacactggcacaagagtggatagaaaaccagagagtaagagag
aagagttactacttctacttacagaacttctctgctgacttgaatacagcagattttaca
gctcattttcgagaaagcgatttggcaaggcagcttcatccaagggaggatgacttaata
tttttggtggtccaaaagaaaaaagacacctttagggaagaaagcgagatggagaaccat
acagtgaatcatgttggtcttgtgacacgattttctcgtgcatctgggtgtttaactaga
caaaaggaacagcatacagtctgccatctttctgtgaaaactcgaggcaatttgtctttc
tttgtaaataagcaagtgaagtgtgtggtggttgggtccctggtgacgacacaccgaaca
ttcaaaggtctattactattgagcaggagtcccctggctaaacccatcataaatccaagt
tacaacgacttctgtccaagagatctgcccgtcgttccagaaagtgccgcatcggatatg
gatgaatacaatgaagatcaaaagagagccattgagacagcttatgccatggtaaagcaa
catccagggcttcccaagatctgcctcatccatggaccacctggaacagggaaatcaaaa
actattgttggacttctgtttcgtgttttgagacaaaacactaggaatgagaaagcaact
caaaaaacaaattccaagatcaagccaaaccgttttctagtttgtgcaccatcaaatgct
gctgttgatgaactcatgaaaaagatcatcgttgcatttaaggaaaaatgccaaaacaga
caggagcctttgggaaactgtggtgatatcaaattagtgcgacttggtgctgaaaaagca
atcaacagtgaagtgcggggatttagcctggataagcaagttgaacacagaatgaaacgg
aagccagctgactgtgaccaggatattcagaagaaaaaagcagctctggatcaacagctg
gacatgctgtctcgtcagcgggccatgcacagatgtgagaagaaggagagtcaattgtta
gatgatgaaatcggcagactttcaaaggagagacagcagcttgcttctcaactaaaggag
gttcgggggcactctcagaaagtacaggtggatatcatcttggagtctgacatcatctgc
tgcacactgagcacaagtggaggaagtctgctggaatctgctttttggaggcaaggactt
gatcctttcagctgtgtcatcgtggatgaggcagggcagtcctgtgaggttgaaacactg
attccactgatccatcgctgtaataaacttgtccttgttggagatcccagacaactccct
cctactgtaaaatcagtaaaagctcaggaatatggctacgatcagtccttgatggcacgc
ctccacaggcacctggaggagcaagtacagaagaatgttttacgaagcctgccagttgtg
cagctgactgtgcagtacaggatgcaccctgacatctgcctcttcccgtccaattatgtt
tatggcagggctctgaagactgacaaagcaacagaagagaacagatgttcttcagagtgg
ccgttccagccctaccttatttttgatgtaggagatggtcgtgaggagcgagacaatgat
tcttttagtaatccccaggaagtgaagctggtcatggaattaattagaacaattaaagaa
aaaaggaaggatctgggtctccgtcgcattggaataattaccccttacagcgcgcagaaa
aagaaaattcaagaacagcttgacagagtgtttaagaataacagcccgggagaagtggac
acagtggatgcattccagggacgagagaaagattgcatcatagtgacgtgtgtccgggca
aacagcactaaaggatcaattgggtttctggcaagccttcagcgtctgaacgttacaatt
acccgagccagattcagcctcttcatccttggaagactgaaaacgctcatggaaaataaa
gactggaatgagttgattcaggatgctcagaaaagaggtgccattatcaagacatcagaa
aaaaactacaggaaagatgctgttaaaattttgaagctcaggacaacagtacaacccccg
accaaagcagggacaaagcaatctcctctgtcacaggcttgttcttccagtagcaagagg
gctgagcttgtacatccaagggaggccagcagcccgcaggaactcgctgcaggtgctggc
cacgcagtgccccaaggaagcaggcagctgcagcagccgcaaggggctcaggctgcagac
tcacctggggaggcggcagggctccctgctgatcaagagaaaccacgggacccaaggctg
gcaagtatggctagtagaaccgaaacaaaagggaaggagcaggcctcaaaagacagcagt
cggtcaggccagagcaatccagggtcaacgtcacagcaaggccttgatgtgtcctcagct
gccaggcatcacgtttctggaacagaaacttctaagaagccccagcaaacgatgggacaa
cgcagtgtcccttccacatcgccttatgcaactcagcacgagggtgactggagagcttct
gtatcaaaaagcagttcaaaagcccgcagtgaagaaggtcaaagtactagcagtaggtgg
aacaaagactatcatgttttaacgaggagaacatcagaagaattaccagagaacagagac
tcaaacagtgccaagcggagaaagacctttcactga
DBGET
integrated database retrieval system
