Brevibacillus sp. HD3.3A: HP435_00765
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Entry
HP435_00765 CDS
T10166
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
breh Brevibacillus sp. HD3.3A
Pathway
breh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
breh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HP435_00765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
breh03400
]
HP435_00765 (mfd)
Enzymes [BR:
breh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HP435_00765 (mfd)
DNA repair and recombination proteins [BR:
breh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HP435_00765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
UED69270
LinkDB
All DBs
Position
124745..128293
Genome browser
AA seq
1182 aa
AA seq
DB search
MQVIINPMKQDSNVGTIVAGLEKGLHEQLVSGLAGSARQTLMAALKQMTGRPVCVVTHNM
YQAQKVYEDLIELVPSDQVLLYPGNELIGSELAIASPEMLAQRIHVFNRLAQGFTGFLVA
PFAGLRRLVVPPEVWKEAQITLSVGDELDIESFLSRCIELGYERVDMVERKGELSVRGGI
IDLYPIDSEWPVRIELFDVEIDSIRTFDMLSQRSLESVQTYILGPAKEMIASTPLLMEAA
VRLEQKLGETVAKLKDGAAKEKVVERIGSDVERMKQGQRFAQLYSYVSVIYPSQDTLISY
MPSETLLIMDEPSRVLDTAAQLQKEEAEWLTGRIIQGEYMANLSLSRTYEDIVSHKKRQI
VHLSLFLRQSPKTQPQNIVNLTCRTMQNFHGQMNVLKTELARWKKSQDQIVFVAADLERA
KRLERVLHDYEMEADVLTEAVEVVPPGRPTIILGNLQTGFELPLNKLVVITEGEVFTAKQ
RKARKVQQTMNNAERIKNYLELKPGDFVVHINHGIGKYLGIETKEILGIHKDYLHIQYAA
GDSLFVPIDQIDHVQKYVASEEAQPKIYSLGGSEWKRVKNKVQSSVKDIAEDLIKLYAAR
EAAVGHAFSSDTTEQRDFESMFPYQETPDQLRAIAEVKSDMERRRPMDRLVCGDVGYGKT
EVAIRAAFKAVMDGKQVAVLVPTTILAQQHYETFRERFADYPIRVEVLSRFRSRKEQNAT
LKGLKEGTVDVVIGTHRLLSKDLTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVITLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYSPALVREAIEREMARDGQVFFL
YNQVQGIEQMAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGV
DIPNVNTLIIHNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGEVKQEAV
TPVEINLQLDAYIPSMYITDSRQKIEMYKKFVAVSTLEDVDDLAEELLDRFGPVPQPVDN
LLTISRLRVYALQHHITEISQKNPDEIKLVLHPSQNNNIDGGALFALASNWSRRLGLSGG
QQITITVKVKGLREDEGVQLIEKLLRQFHQVRKDTGTESPVS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcatcattaacccgatgaaacaagactcgaacgtcgggacaattgtggctggt
ttggagaaaggtctgcatgagcagcttgtctccggtctagcaggctcagcccgacagaca
ctgatggcggcactgaaacagatgaccgggcgcccggtttgtgtcgtcacgcataacatg
taccaagcacaaaaagtatacgaggatcttattgagctggttccttctgatcaagtgctg
ctttatccgggaaacgagctgattggctctgagcttgccatcgccagtcccgagatgctg
gcgcagcgcattcatgtattcaaccgtctggcccaaggctttacgggttttttggttgcg
ccattcgccggattgcgccgcctggttgtgcctcccgaagtgtggaaagaggcgcagatt
acgctgtctgtcggtgacgagctggatatcgaatcgtttttgtcccgctgtatcgagctt
ggttacgagcgcgtcgatatggtcgagcgaaaaggcgaactgagcgttcgcggcggaatt
atcgacctgtacccgattgattccgagtggcctgtgcgcatcgagctgttcgatgtggag
attgactcgatccgtacgttcgacatgctttcccagcgctcgcttgaatcggtgcaaacc
tacattttgggcccggcaaaagaaatgatcgcctctacgcctttgctgatggaagcggct
gttcgcttagagcagaagctcggtgaaaccgttgccaagctgaaagatggcgccgccaag
gaaaaagtggtcgagcggattggttcggatgtcgagcgtatgaaacaagggcagcgtttt
gctcagctgtactcgtacgtttccgtcatttatccgtcacaggacacgctgatctcctac
atgccgtctgaaaccctcttgatcatggatgagccttcccgcgttttggatacggcagca
cagctgcaaaaagaagaagcagagtggctgaccggacgaatcattcagggcgagtacatg
gctaacctgagcctgtcccgcacttatgaagacatcgtttcccacaagaagcggcagatt
gtccacctgtctttgttcctccgacaatctcccaagacccagccgcaaaacatcgtcaac
ctgacctgtcgcactatgcagaacttccacggacagatgaatgtgctgaaaacagagctg
gcccgctggaaaaagtctcaggaccagatcgtttttgtcgcggccgatctggagcgtgcc
aaacgtctggagcgcgtcctgcacgattatgagatggaagcagatgtgttgaccgaagcg
gttgaggtggtgccaccagggcgtcctacgatcatcttggggaacctccagacaggcttc
gagctgcccctgaacaagctggtcgttattacggagggcgaagtatttaccgccaagcag
cgtaaagcgcgcaaagttcagcagacgatgaacaatgcggagcggatcaaaaattacttg
gagctaaagcccggcgattttgtggtgcacatcaatcacgggattgggaagtaccttgga
attgaaaccaaggaaatactcggaattcataaagattaccttcacattcaatacgcagca
ggcgacagcctgtttgtgccgatcgatcaaatcgaccatgtgcaaaagtacgtggcgagc
gaagaagcccagccgaaaatctacagcttgggcggaagcgaatggaagcgggtcaaaaac
aaagttcagtcttccgtcaaagacattgccgaggatttgatcaagctgtacgctgcgcgc
gaagcagcggtcggtcacgccttttcctcagatacaaccgagcagcgtgactttgaatcg
atgtttccgtatcaggagactcccgaccagttgcgggcaatcgctgaggtcaaaagcgat
atggagcgcagacgcccgatggatcgcctcgtctgcggagacgtgggttacggaaaaaca
gaagtggcgattcgcgcagcgttcaaggctgtcatggacggcaaacaggtggctgttctc
gttccgacgacgattttggcgcagcagcattacgagacgtttcgtgagcgttttgccgac
tacccgatccgggttgaggtgttgagccgttttcgctcgcgcaaggaacaaaacgctacg
ttaaaaggactgaaggaaggcactgtcgatgtcgtcatcggaacgcatcgtttgctgtcc
aaagacttgacgtttcgcgaactcggactgctcatcgtcgacgaggagcagcgtttcggt
gtgagtcacaaagaaaagctgaagcaaatcaagacaaatgtcgatgttatcacgttgacc
gcgacgccaatcccgcggacgctgcacatgtcgatgctgggtgtgcgtgacttgtctgtc
atcgagacaccgccagaaaaccgtttccctgtgcagacgtacgtaatggaatacagtcct
gcgctggtgagagaagcgattgagcgcgagatggcgcgcgacggccaagtatttttcctc
tacaatcaggtgcaaggcattgagcagatggctgaacaaatatccatgctcgtgcctgat
gcacggatcgcggtagcgcacggccagatgaatgagagcgagctggaaggcgtcatcctc
gactttttggaagggaattttgacgtgttggtcagcacgacgatcattgagaccggggtg
gacatcccgaacgtgaacacgctgatcatccacaatgccgacaaaatgggcctgtcccag
ctgtatcagcttcgcggacgggttggacgttcgaaccggattgcttatgcttacttcaca
taccaacgggacaaggtgctgacagaagtcgcagaaaaacggcttcaggcgatcaaggaa
tttacggaactcggctccggcttcaagatcgccatgcgcgacttgtcgatccggggggct
ggtaatttgctcggtgccgagcagcacgggtttatcaatacagtcggtttcgacctgtac
agccagatgctcaaggaagcgattgacgagttgaagggagaggtcaagcaggaagcggtt
acgcctgtggaaatcaatctccagctcgatgcttacatcccgtctatgtacattaccgac
agccggcaaaagatcgagatgtacaaaaagtttgtggcggtatccacgctggaggatgtc
gacgatctggcagaggaattgttggaccgtttcggccctgttccgcagccggttgacaat
ctcctgaccatttcccgtttgcgtgtctatgcgctgcaacaccacatcaccgagatcagt
caaaaaaatccggatgaaatcaagctcgttctccatcctagccaaaacaacaacattgat
ggcggtgctctgtttgcgcttgccagcaactggagccggaggttggggctctcaggtgga
caacagatcacgattactgttaaagtaaaggggttaagggaagacgaaggtgtacagctg
atcgagaagctgcttcgtcaatttcaccaggtgcgtaaagacaccggtacggagagtcct
gtgtcctaa
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integrated database retrieval system
