Brevibacillus sp. HD3.3A: HP435_10700
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Entry
HP435_10700 CDS
T10166
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
breh Brevibacillus sp. HD3.3A
Pathway
breh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
breh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HP435_10700 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
breh03021
]
HP435_10700 (rpoD)
Transcription machinery [BR:
breh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HP435_10700 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
tify
COPI_C
Motif
Other DBs
NCBI-ProteinID:
UED71076
LinkDB
All DBs
Position
2178362..2179489
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AA seq
375 aa
AA seq
DB search
MNKQNITSDMEAMSIEQVKEQLVELGKKRGVLSYKEITDRLAAFEQDSDQMDEFFEYLGD
QGIEINNNENDDDDEVDEMIMKDEDNEEFDFDDLSVPPGIKINDPVRMYLKEIGRVPLLS
AEEEIKLAQRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVE
KFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRE
PMPEEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAY
ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK
LRHPSRSKRLKDFLE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaaaatatcacttctgacatggaagcaatgtccatcgaacaagtgaaggag
cagttggtcgaattaggcaagaaacgcggcgttttgtcgtacaaggaaattacagatcgc
ctcgcagcatttgaacaggattccgatcagatggatgagtttttcgaatacctgggtgat
caaggtatcgagattaacaacaatgagaatgacgacgacgatgaagtcgacgaaatgatc
atgaaggatgaggacaacgaagaattcgactttgacgatctctccgttccacctggaatt
aagatcaatgaccctgtacggatgtacctgaaagaaatcggtcgtgttcctctgctctcc
gcagaagaggagatcaaactggcccagcggattgagcaaggggatgaggaagcgaagaga
cgactggccgaagcaaacttgcggttggttgtatcgattgccaagcgttatgtaggacgc
ggcatgttgttccttgacctgattcaggaaggaaacatgggactgattaaagcggtagaa
aaatttgattaccgcaaaggctacaagttcagtacgtacgcgacttggtggattcgtcag
gcgattacgcgcgcgattgcagaccaggcacgtacgatccggattccggtgcatatggtg
gaaaccatcaacaagctgattcgtgtttcccgtcagcttcttcaggagcttggacgcgag
ccgatgccggaagaaatcgcggaaaaaatggatctgaccccggaaaaggttcgggaaatc
atgaagattgctcaagagcctgtttcgctggaaacgccgatcggggaagaagacgattct
cacctgggcgacttcatcgaagatcaggacgcgctggagccatctgatgctgctgcgtat
gaactgttgaaagagcagctcgaagacgtgctggacacgttgactgatcgtgaagaaaac
gttcttcgcttgcgcttcggtctggatgacggacgtacccgcacactggaagaagtgggc
aaagtattcggcgtcactcgtgagcgcatccgtcaaattgaggcgaaagcactacgcaaa
cttcgtcatccgagtagaagcaaacgcttaaaagatttcttggaatag
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