Brevibacillus sp. HD3.3A: HP435_16540
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Entry
HP435_16540 CDS
T10166
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
breh Brevibacillus sp. HD3.3A
Pathway
breh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
breh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP435_16540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breh03019
]
HP435_16540
03009 Ribosome biogenesis [BR:
breh03009
]
HP435_16540
Enzymes [BR:
breh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HP435_16540
Messenger RNA biogenesis [BR:
breh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HP435_16540
Ribosome biogenesis [BR:
breh03009
]
Prokaryotic type
rRNA helicases
HP435_16540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RelE
VMAP-M0
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UED66916
LinkDB
All DBs
Position
complement(3603637..3605226)
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AA seq
529 aa
AA seq
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MTMFSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPL
VEKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQGV
QIVVGTPGRVMDHLRRKTLKLENVHTLILDEADEMLDMGFIEDIETIINHMPEERQTLLF
SATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDRNKVESLCRILDSEDVE
LGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNSFREGSIEFLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKA
QVLSRNVPSLEEVAERKQEQLREQLTSLLESDAIADMYQKVAESLVAQYPAEKVAAAALH
LAFHSEAGQMQEAEAYNFGETGAAKGMVRFFLNVGRNANMKPQDLVREISESVGIPGKSV
GRIDIFENFTFVEVPEEVAAFVYESLRQTRINGKRINLEPAKPRGAKRS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgttttctgattttcctttacataaatccattttgcaggcgatccacgatatg
ggcttcgaagagccatcgccgattcaggcagcctgcattccgaaagtgctggacggagga
gacttgatcggtcaagcacagaccggaacgggaaaaacagcggctttcgggattccgctt
gtagaaaaaattacaccagccaatcgcgtacaagcgattgtgttgaccccgactcgcgag
ttggccatccaggttgccggagagcttttgcgcatctccaagtacaacaaagtgcgcaca
ctgccaatctacggcggacagtccatcggtcaccagattcgcgctctgcgccaaggcgta
cagatcgtggtgggaacccctggacgcgtcatggaccatttgcgtcgcaaaacgctgaag
ctggagaatgtacatacgctcattctcgatgaagcggacgaaatgctggacatgggcttc
atcgaagatatcgaaacaatcatcaatcatatgccggaagagcgccagacgttgctcttc
tctgcaacgatgccgcctgaaatcaagcgtttggctacccgttacatgaaacagccgcaa
acgatcgctgtcagccgcgaagaagtgacagcgccgttgatcgagcaagtgtactacaaa
gtgttcgaccgaaacaaagtagagagcctgtgtcgcattctcgacagcgaagatgtagag
cttggcatcatcttttgccgtaccaaacgcggcgtagatgagctgtccgaagtgctgcaa
tcccgcggatacttggcagatggcttgcacggtgacctgtcccaggcacagcgcgacaaa
gtgatgaactctttccgtgaaggctcgattgaatttttgatcgcaacagacgtagcagcg
cgcgggatcgacgtaggcaacgtctcgcacgtaatcaactacgacattccgcaagactcc
gaaagctacgtgcaccggatcggccgtacaggccgtgcaggacgcaaaggaatcgccatg
acattggtgacgccgcgcgaagtcagacagatgatgttcatccagaagcagacaaaagcg
caagtgctgtcccgcaacgtaccgtcgcttgaggaagtggcggagcgcaagcaagaacag
cttcgcgagcagctgacaagccttttggagagcgatgcgatcgcggatatgtaccaaaag
gttgcggaatcgctcgtcgcccaatacccggctgagaaagtcgcggctgctgccctgcat
ctggctttccattccgaagcaggccaaatgcaggaggcagaagcgtacaacttcggagag
acgggtgctgcaaaaggcatggttcgcttcttcctgaacgtaggccgcaatgcgaacatg
aagccgcaagatttggtgcgcgagatttccgagtcggtaggcattcctggcaaatcggtt
ggccgcatcgacattttcgagaacttcacgttcgtggaagtgccggaagaagtggcggca
ttcgtttacgagtcgctgcgccaaacccgcatcaacggcaaacgcatcaacctggagccg
gcaaagccgcgcggtgcaaaacgctcctaa
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