Brevibacillus sp. HD3.3A: HP435_25575
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Entry
HP435_25575 CDS
T10166
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
breh Brevibacillus sp. HD3.3A
Pathway
breh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
breh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP435_25575 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breh03019
]
HP435_25575 (rnr)
03016 Transfer RNA biogenesis [BR:
breh03016
]
HP435_25575 (rnr)
Enzymes [BR:
breh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HP435_25575 (rnr)
Messenger RNA biogenesis [BR:
breh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HP435_25575 (rnr)
Transfer RNA biogenesis [BR:
breh03016
]
Prokaryotic type
tRNA degradation factors
HP435_25575 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
OB_Dis3
RNase_II_C_S1
S1_RRP5
S1CSD-TOTE-2
TFA2_Winged_2
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
UED68574
LinkDB
All DBs
Position
complement(5457324..5459828)
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AA seq
834 aa
AA seq
DB search
MTDQEKILAFMREQAYHPMTVKELEEAFEIKDSASFKELVKTLNALEAGGEIIRTRANRY
GVPEKMNLVRGRLQSHPKGFGFIIPETPDMEDVYVHANDMNGAIHGDTVLVRVEKEAGGN
RLEGRIVRIVERGMTQVVGTFKDETYYAFVIPDEKRIGKDIFIPKTAYNGAVDGHKVVVN
IVRYPEGRVNPEGEIVEILGHKNDPGVDILSIIRKFNLPEAFPDEVLAEAEASPDEISED
EIKERRDLRDRMMVTIDGADAKDLDDAVSLEVLPNGNVRLGVHIADVSYYVREKSALDNE
AYRRGTSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTISCDMEMDQNAQLVKYDIFLSVI
RTNERMTYADVRSILEDKDEALLEKYSELVPMFEEMKKLALKLRSKRMQRGAIDFDFREA
KIFVNEEGAPTEIGFRTRSIAEQIIEEFMLAANETVAEHFHWMKQPFMYRIHEDPNAEKL
MSFMEFITNFGYSIRGKGNSVHPRALQQLLEEVKGTPEEIIISTVMLRSMKQARYDAESL
GHYGLSTEFYTHFTSPIRRYPDLIVHRRIRDWIEQGNNLSEKRLAYWAEQMPVIAEHASQ
RERLAVDAERETDDLKKAEFMKEHIGEEFEGVISSVTSFGIFVELPNTIEGLVHISFLTD
DYYHYHEKMYALVGERTGKQYRIGDVVQVRVASVNVDERTIDFEIVGMTKAAGFRGSRER
TPRVIDGRGGERKPTRGKQDRSRGGRPERPDRQKDKKHPAEIRQKYKDRRRSEGTKASRP
PASGSAGAKEEVLPIGTGGEENQSQNQKGFWEDFVRSKKKNRKNVASQVKRKRR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcaagaaaaaatactcgcgttcatgcgcgagcaggcctatcacccgatgaca
gtgaaggaactggaggaagcgtttgaaatcaaggactcagcttccttcaaggaactggtg
aagacgctgaacgcactggaagccggcggagagattatccgcactcgtgcgaatcgatat
ggtgtacctgaaaaaatgaatttggtgcgcggacgtctgcaaagccatccaaaaggcttt
gggtttatcatcccggaaacacctgacatggaagatgtatacgtacacgccaacgacatg
aacggagcgattcacggtgataccgtgctggttcgtgtggaaaaggaagcgggcggcaat
cgcctggaaggacggatcgttcgcatcgtcgagcggggaatgacccaagttgtcgggacg
ttcaaggacgagacgtactacgcgtttgtcatcccggatgaaaagcggattggcaaagac
attttcatcccgaaaacggcgtacaacggagcggtagacggccacaaagtagtcgtcaat
atcgtccgctacccggaaggacgggtgaatccagaaggagaaatcgtcgagattctgggg
cacaaaaacgacccgggagtcgatatcctgtcgattatccgcaagttcaatctgccggaa
gcgttcccggatgaggtgctggcggaagcagaggcttcgccggacgaaatttccgaagac
gaaatcaaggaacgccgcgatctgcgcgaccggatgatggtcacaatcgacggagcggac
gcgaaggatttggacgatgccgtgtcgcttgaagtgttgccgaacggaaatgtaaggctt
ggcgtgcatattgccgacgtcagctattatgtccgtgaaaagtctgcgctggacaatgaa
gcgtatcgccggggtacgagcgtctatttggtcgaccgtgtcatcccgatgctgccgcac
cgcttgtcgaacgggatatgcagcttgaatccaaaagtggatcggctgacgatctcctgc
gatatggagatggaccaaaatgcgcagctggtgaagtacgatattttcctcagcgttatc
cgtaccaacgagcgcatgacgtacgccgatgtgcgcagcatcctggaagacaaggacgaa
gctttgcttgagaagtacagcgagcttgtcccgatgttcgaggaaatgaagaagctggca
ctgaagctgcgttccaagcggatgcagcgcggagccatcgacttcgatttccgcgaagcg
aaaatttttgtcaacgaagaaggcgcaccgacagagatcggcttccgcacgcgctcgatt
gccgagcagattattgaagaatttatgctggcagccaacgagacagtggcagagcatttc
cactggatgaagcagccgttcatgtaccgcattcacgaagacccgaacgcggagaagctc
atgtctttcatggagtttatcacgaacttcggctattcgatccggggaaaaggcaactct
gtacatcctcgtgcgctgcaacagctcttggaggaagtcaaaggcacgccggaagaaatc
atcatcagcacggtcatgctgcgttccatgaagcaagcgcgctacgacgcggaaagcctc
ggtcactacgggctgtccaccgagttttacacgcattttacatcgccgattcgccgctac
ccggacctgattgtccatcgccgcattcgggattggatcgagcagggcaacaacctgtca
gagaagcgtttggcgtattgggcggagcaaatgccggttatcgccgagcacgcttcccag
cgcgagcggttggctgtggacgccgagcgtgagacggacgacctgaaaaaagcggagttc
atgaaagagcacatcggagaagaatttgaaggcgtgatctccagtgttacctcgttcgga
attttcgtggagctgcccaatacgatcgaggggctggtgcacatcagcttcctgaccgac
gattactatcactaccatgagaagatgtatgcgctggtaggggagcgaactggcaagcag
taccgcatcggggatgttgtgcaggttcgcgtggcgagtgtcaacgtggatgaacgcacc
atcgattttgaaatcgtcggcatgaccaaagcggcaggtttccgcggcagccgcgaacgt
acaccgcgcgtcatcgacggacgcggaggagagcgcaagccgactcgcggcaagcaggat
cgttcccgtggaggccgcccagaacggccagatcgccaaaaggacaaaaagcacccggct
gaaatccggcaaaaatacaaggatcgccgcagaagcgaaggaaccaaagcttctcgtcca
ccagcttccggatcagcaggtgccaaggaagaggtactgccaatcgggacaggcggagaa
gaaaatcaatcacagaaccagaaaggcttctgggaagattttgtccgctccaaaaagaaa
aaccgcaagaatgtagccagccaggtcaaacggaagcgccgttaa
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