Bremerella sp. P1: PSR63_02415
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Entry
PSR63_02415 CDS
T09589
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
brem
Bremerella sp. P1
Pathway
brem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR63_02415 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brem03019
]
PSR63_02415 (rnr)
03016 Transfer RNA biogenesis [BR:
brem03016
]
PSR63_02415 (rnr)
Enzymes [BR:
brem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSR63_02415 (rnr)
Messenger RNA biogenesis [BR:
brem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSR63_02415 (rnr)
Transfer RNA biogenesis [BR:
brem03016
]
Prokaryotic type
tRNA degradation factors
PSR63_02415 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
S1_RRP5
S1CSD-TOTE-2
HTH_27
Motif
Other DBs
NCBI-ProteinID:
WDI42798
LinkDB
All DBs
Position
complement(582706..585060)
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AA seq
784 aa
AA seq
DB search
MEIEEIEAKLLHHVNGPNYQPVKPKVIAKKLGLTEDDRKPFKRALKRLIRKGLVRYGANH
LVKKPSAEDGDKRIVGRYQRNAKGFGFVRPQGVAPSKGREADIFVPPRRGMDAATGDLVL
IRTYLGRGPGGDQRLCGEVVEVVERETHRFVGTYYETHGMALVQVDGRIFAEPIPVGDPG
AKNAQPEDKVVIEMVRFPSHAHDGEAVLVEVLGKRGEPGVDLMSIIVEYDLPREFPEAAL
DVAREQAELFDESIPEGRRDFTPDTVITIDPIDARDFDDAISLERLDNGHWILGVHIADV
SHFVPEGSALDVEARDRATSVYLPDKVIPMLPETISNNLASLQPDKVRYTRTAIIEFTPE
GARVNCEVCKGAILSKRRFAYEEVDEYLADREPWKEKLTPEVFGLLGRMHELAMMLRKRR
FARGSMELSMPELKLDINKDGEVIGAHTVENTESHQIIEEFMLAANEAVAEALFDRDLFF
LRRAHASPDPKKLADLTEFVRDLGIECDSLESRFEIIRVLNEVKGKPEQAAVNYAVLRSM
QKAVYSPDEIGHYALASEHYCHFTSPIRRYPDLTIHRMFDLIEHGVRPPQDFGQMQLEGE
HCSEREQRAADAERELVKIKLLTYMSTRIGEEVDAVVTGVESFGLFVQALDVPADGLVRI
DSLNDDFYRYDQTTHSLVGHHEGNSFRLGDVLTVRIARVDLDRRELDYQFIEKTGEQSSK
QPAKSLGGGRSGGSKYKPKVQSSSMKFSAQSSRPKKGGRDGHKSKQGTSPSRPKKDKRSK
RRGR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaagaaatcgaagcaaagttacttcatcacgtaaacggaccgaactaccaa
ccggtcaaaccaaaagtcatcgccaaaaagttgggcctaaccgaggatgatcggaagccc
ttcaaacgagccctgaagcggctcattcggaaaggattggttcgctacggagctaatcat
ctggtcaaaaagccctcggctgaagatggcgacaagcggattgttggccgttatcaacgc
aacgccaaaggatttggattcgtccgcccgcaaggtgttgctccctccaaaggtcgcgaa
gccgatatctttgtcccgccgcggcgaggaatggatgccgccaccggcgacctggtgctc
attcgtacttacctgggacggggtcctggcggcgaccaacgcctgtgcggcgaagtcgtc
gaggtggtcgaacgcgaaacgcatcgtttcgtgggaacgtactacgagacccatggcatg
gccctggtacaggtcgatggacgcatcttcgccgagccgatcccggtaggagatcccggc
gcgaagaatgcccagccggaagacaaagtcgtgatcgaaatggtccgctttccttcgcat
gcccatgatggcgaagcggtcctcgtggaagtgctgggcaagcgtggcgaacccggcgtc
gacttgatgtcgatcatcgtcgaatacgatctgccacgcgagttccccgaagcagcgttg
gacgttgcccgcgaacaagccgagttgtttgacgagtcgatccccgaaggtcggcgagac
ttcaccccggacacggtcatcacgatcgatccgatcgatgcccgcgacttcgacgacgcg
atcagtttagaacggctcgacaacggtcactggatcctcggtgtgcatatcgccgacgtt
tcgcacttcgttcccgaaggaagtgcgttggatgtcgaagcccgtgaccgtgcgaccagt
gtctacttgccggacaaagtcattccgatgttgccggaaacgatcagcaacaacctggcc
agcttgcaaccggacaaggtgcggtacacgcgaacggcgatcatcgagttcactccggaa
ggtgcccgcgtgaactgtgaagtttgcaagggagcaatcctcagcaaacgccgcttcgcc
tatgaagaagtggacgagtatctggccgatcgcgagccgtggaaggaaaagctgacgccg
gaagtcttcggcttgctcggccgtatgcacgaactcgcgatgatgctccgcaagcgtcga
ttcgctcgtggcagcatggaactgagcatgccggaattgaagctcgacatcaacaaagat
ggcgaagtgatcggcgcgcacacggtcgaaaacaccgagagccatcagatcatcgaagag
ttcatgctggcggccaatgaagcggtggccgaggcgctgttcgaccgtgatttgttcttc
ctgcgtcgtgcccatgcttcgcctgacccgaagaaactagccgacctgaccgagttcgtc
cgcgatctgggcattgagtgcgatagcctggaaagccggttcgagatcatccgagtcttg
aacgaagtcaaaggaaagccagagcaagccgcggtcaactatgccgtgctgcgaagcatg
cagaaggcggtgtacagtcctgacgagatcggtcactacgccttggcgagtgagcactat
tgccacttcacctcgccgattcgccgctaccctgacctgacgatccatcgcatgttcgac
ttgatcgagcatggcgtccggccgccgcaagacttcggccagatgcagctcgaaggagag
cactgcagcgaacgcgagcaacgggccgccgatgccgagcgggaactggtcaaaatcaaa
ctgctcacctacatgagcacccgcatcggtgaagaagtcgatgccgtggtgactggggtc
gaatcgtttgggctcttcgtccaggccttggatgtcccggccgacggtctggtccggatc
gattcgctcaacgatgacttctaccgttacgatcagaccacccatagcttggtgggacat
cacgaagggaattcgttccgactgggcgatgtcctgacggtgcggatcgcccgggtcgac
ctcgatcgacgcgaactcgactaccagttcatcgaaaagacgggcgagcaaagctccaag
caaccggccaagtcgctgggcgggggccggtctggcggcagtaagtacaagccgaaggtg
cagagctcgagcatgaagttctcggcccaatcaagccgtcccaagaagggtggccgggat
ggtcataagtcgaagcaagggacttcgccgtctcgcccgaagaaggataaacgctcgaaa
cgacggggacggtag
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