Bremerella sp. P1: PSR63_13550
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Entry
PSR63_13550 CDS
T09589
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brem
Bremerella sp. P1
Pathway
brem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR63_13550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brem03019
]
PSR63_13550
03009 Ribosome biogenesis [BR:
brem03009
]
PSR63_13550
Enzymes [BR:
brem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSR63_13550
Messenger RNA biogenesis [BR:
brem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSR63_13550
Ribosome biogenesis [BR:
brem03009
]
Prokaryotic type
rRNA processing factors
PSR63_13550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
CGGC
Motif
Other DBs
NCBI-ProteinID:
WDI44963
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All DBs
Position
3230458..3232155
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AA seq
565 aa
AA seq
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MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQENFVGNIYKGVVVNLEPSIQAAFVD
FGVGKNGFLHISDVEPQYFRQGGYDPAAQYDRPEDLAASRFGSDFGDDDDNDDSDDDSPS
SGGGTKTQQRRGRRQRPGARPRVKPPIQEIFKRGDEVLVQVIKEGIGNKGPTLSTYISIP
GRYLVLMPALGRVGVSRKIEDDQVRRRLRGTLLDLDPPKGLGFIVRTAGQDRTKKDLSRD
MAYLLRLWRLIVRRIRKSTGPCEIYEESDMIIRTIRDIFAADVDAIYIDRKEQYEAAKEF
LQLVMPRFVDRLQRHDTKEALFRKYNLDEEIAKIHQREVPLSRGGSIVIDQTEALVAIDV
NSGNFRYDGSSEEAAYQLNLLAAKEIARQLRLRDLGGVIVNDFIDMRREKHRANVERALK
DAVKRDRARTKILRTSPFGLIEMTRQRVRPSLKRSIFRDCPCCSGRGVVKSSESMAIEVT
RVLIAAAQQPKASQINCRVNEEVAAYLNNKKRREIAVIEDDNRVVVHIIGSESVFPEHVE
VECKDAEGRRIYMTDPHDASRNGRR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagagatgctgatcaacgtatcgcagccggaagaatgccggattgcgatcgtg
gaagatggaattctggaagagttctatctggaacggaccagccaggaaaactttgtcggc
aacatctacaagggtgtcgtcgtcaatctcgagccaagcatccaagcagcctttgtcgac
tttggtgtcggcaagaatggcttcctccacatcagcgacgtcgagccacaatacttccgc
caaggcggttacgatccggctgctcagtacgatcgccccgaagacctggccgcatcgcgg
tttggcagtgacttcggtgacgacgacgataacgacgacagtgatgatgacagtccatcc
agcggtggcggaaccaagacgcaacagcggcgtggtcgtcggcaacgtccaggtgcccga
cctcgcgtgaaaccgccaatccaagagatcttcaagcgaggcgacgaagttctcgtgcag
gttatcaaggaaggcatcggcaacaagggaccaaccttgtcgacctatatcagcattcca
ggacgctacctggtgctgatgccggctctcggtcgcgtcggtgtttctcgcaagatcgaa
gacgaccaagtgcggcgtcgcttgcgtggcacgctcttggaccttgatccgccgaagggt
ctgggcttcattgttcgcaccgccggacaagatcgaaccaagaaagacctgtcgcgcgac
atggcgtatctgcttcgactgtggcgattgatcgtccgccgcatccgcaagtcgacggga
ccttgcgagatttacgaagaaagcgacatgatcattcgcaccattcgtgacatcttcgcc
gctgatgttgatgcgatctacattgatcgaaaagagcaatacgaggccgccaaagagttc
ctgcaactcgtgatgccgcggttcgtcgatcgtttgcagcgacacgacacgaaagaagcc
ctcttccgcaaatacaacctggacgaggaaatcgcgaaaatccaccagcgcgaagttccc
ctgtcgcgcggtggttcgattgtgatcgatcagaccgaagcactcgtggcgatcgacgtg
aacagtggtaacttccgctacgatggcagttcggaagaagctgcctaccagttgaacctg
ctggccgccaaggaaatcgctcgccaacttcgtcttcgcgacttgggcggtgtgatcgtc
aatgacttcattgatatgcgacgtgaaaaacatcgcgcaaacgttgaacgtgccctgaag
gatgccgtgaaacgcgaccgtgcccgaacaaagatcttgcggacgagcccgtttggcttg
attgaaatgacgcgtcagcgtgtccggccaagcctcaagcgaagcatcttccgcgattgc
ccttgctgcagcggtcgtggcgtcgtgaagtcgtccgaaagtatggcgattgaagtgacg
cgtgtcctcattgctgccgcccagcagcccaaggcaagccagatcaactgccgcgtcaac
gaagaagtggctgcctacctgaacaataagaaacgccgcgagattgcggtcatcgaagac
gataaccgcgtggtcgttcacatcattggcagcgagtcggtcttcccagagcacgtcgag
gtcgaatgtaaagacgcggaaggccgccggatttacatgaccgacccacacgatgcttcc
cgcaacgggcgtcggtaa
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