Bremerella sp. P1: PSR63_14060
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Entry
PSR63_14060 CDS
T09589
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brem
Bremerella sp. P1
Pathway
brem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSR63_14060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brem03021
]
PSR63_14060 (rpoC)
03400 DNA repair and recombination proteins [BR:
brem03400
]
PSR63_14060 (rpoC)
Enzymes [BR:
brem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSR63_14060 (rpoC)
Transcription machinery [BR:
brem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSR63_14060 (rpoC)
DNA repair and recombination proteins [BR:
brem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSR63_14060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WDI45059
LinkDB
All DBs
Position
3342651..3347099
Genome browser
AA seq
1482 aa
AA seq
DB search
MSILESSYDRINDYTAVKISLARPHDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKITHSRVRRKRMGHIELAAPIVHIWFFKAMPSR
LGNLLAMKTSSLEKVIYFQDYVVIDPGSTDLEKFQTLTEEEYRGAVEQFGAGSFEADMGA
EAVRKLLQGLDLVQLSIDLRKDLAETGSKQKRKDYINRLKIVESIRDSDNKPEWMIMDVI
PVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRMK
LHQCGLPKKIALELYQPFIIRKLKVLGHADTIKSAKKMLERKDEEVWDILESVIQNHPVL
LNRAPTLHRMGIQAFEPTLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAHT
LMLATNNIFAPSNGKPIMSPSQDVVMGCNFITISLPNRPGEGMTFSSMDEADYAFAQGII
DLHALIKVRLPEGRKLKGEDDEESSSRIIETTFGRVLFNEMLPAGMDYYNHSLGSSELSK
VISDCYQRLGRRATINLLDDMNQLGFRESTRSGLSFATDDLVTPDSKHKIIGEAEKKVIK
FKKLYERGVITDKERVNQVLDAWTHAREQITAEMMTEMKNDDRGGHGYINPVYLMADSGA
RGGTEQIRQLAGMRGLMAKPSGEIIETPIKSNFREGLTVLEYFSSTHGARKGLADTALKT
ADSGYLTRKLADVAQNVVITAEDCGTTQGITKGVIYRGEKVEVSLADAIKGRVSRQSIVN
PITDEVIVRENEMITPDTARKIEKMGLERIQVRSPMTCDNGLGCCKACYGMDMSTGDQVE
EGMAVGIIAAQSIGEPGTQLTMRTFHIGGVAVTDTEEHEKKTKRGGFVKFTRMRTATNDE
GKDIVLTRNGEITIVDAKGREIESYDVPTGATLEVKENSEVKTGQVLCSWNPYSIPIVAE
VGGRVRYEDVVEGETMIIEHDSTGTTRRMITEHKGDFHPQLVIEDEDGKPLDVYYLPEKA
IIDAEEGAKVSAGTTVASTPRESGGVKDITGGLPRVTEIFEARKPKDPAVMAEIDGVVEI
LSEKKRGKRTIIVRSESGIEREHLVPHGKRFLVHTGDYVKAGQSLIDGPLVPHDILRISG
EEAVQQYLLHEIQGVYRSQRVEINDKHIEIIVARMLRKVMVDSAGDTSLLPGLVMDKFDF
RRANDQLSRCLKISGTGDSQQFTEGMIVPKEALEQENGQIESLGGNPAKGTKPAAASAST
QLLGITKAAVQSSSFISAASFQETTKVLTEAALAGKVDELIGLKENVILGHLIPAGTGFR
TFQDSEVRINPEALAELASRTRERTLEESFPLLQDGGEQPQPGQGPAAISEMAPAPGLES
LLGGGGPIPATEGPTYGEQPPQLPPMPPQDGGEGFDPNRDEL
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgagtattctcgaaagctcttacgaccgaatcaacgattacaccgcggtcaagatcagc
cttgcacggcctcatgacattcgcagctggtcgttcggtgaagtcaaaaagccagagacg
atcaactaccgaacctaccgaccagaaaaggacggccttttctgcgaacgtatcttcggc
ccggaaaaggactgggaatgtgcctgcggtaagtaccgcggcatgaagtataaaggcatg
atctgcgatcgctgtggtgtgaaaatcacgcacagccgcgttcgccgtaagcgcatgggg
catatcgaactggccgccccgatcgtgcacatctggttcttcaaggctatgcctagccgc
ctgggtaacctgctggcaatgaagacctcgagcctggaaaaggtgatctacttccaggac
tacgtcgtgatcgatccaggctccaccgatctcgaaaaattccagacactgaccgaagaa
gaataccgcggtgcagtcgagcaattcggtgctggctcgtttgaagccgacatgggtgcc
gaagcggttcgtaagctgctgcaaggtttggacctggtccaactgtcgatcgatctgcgt
aaagatctggccgaaaccggctcgaagcagaagcgtaaggattacatcaaccgcttgaag
atcgttgagtcgatccgtgacagcgataacaagccggaatggatgatcatggatgtgatt
ccggtcattcctccggatctgcgtccgctggttctgttggattccggcaactttgccacg
tccgacttgaacgacctctaccgtcgtatcatcaaccgcaacaaccgtctgcggaagttg
gtcgacctgaacgctccggaagtcattatccgcaacgaaaagcgtatgcttcagcagtcg
gtcgacgcattgttcgacaacaaccgctgcaagcgtccggttctcggtagcagcaaccgt
ccgctcaagtccttgaccgacatgatcaagggtaagcagggacgtttccgtgaaaacctg
ctcggtaaacgcgtcgactactcggcacgttccgtgatcgtggttggtcctcggatgaag
ctgcatcaatgcggtttgcctaagaagatcgctctggaactgtaccagccgttcatcatc
cgcaagctcaaggtgttgggtcacgccgataccatcaagagcgcaaagaagatgctcgag
cgaaaggatgaagaagtctgggacatcttggaatcggtgatccagaatcacccggttctg
ttgaatcgtgccccgacgcttcaccgtatgggtatccaggcattcgagccgaccctggtg
gaaggtaacgcgattcaccttcacccgctggtctgtaaaggcttcaacgctgacttcgac
ggcgaccagatggccgttcacctgccgctttcgattgaagctcaggtcgaagcccatacg
ctgatgttggcaaccaataacattttcgctccgtccaacggcaagccgattatgagcccg
tcgcaggacgtggtgatgggttgtaactttatcaccatcagcctgccaaatcgtcctggt
gaaggcatgaccttctcctcgatggacgaagcagactatgcgttcgcccagggcatcatc
gacctgcatgccctcatcaaggttcgtctccccgaaggtcgcaagctcaagggcgaggac
gacgaagagagcagcagccgaatcatcgaaacaaccttcggtcgcgtcttgttcaacgag
atgctgccagcgggaatggactactacaaccactcgctgggtagtagtgaactgtccaag
gtgatctccgactgctaccagcgtctgggtcgtcgtgcaacgatcaacctgctggacgat
atgaaccaacttggtttccgcgaatcgacccgtagtggtctgtccttcgcgaccgacgac
cttgtgactccggattcgaagcacaagatcatcggtgaagccgaaaagaaggtgatcaag
tttaagaagctgtacgaacgcggcgtgatcaccgacaaggaacgtgtgaaccaggttctc
gacgcttggactcatgctcgtgagcagattactgccgagatgatgaccgagatgaagaac
gacgatcgtggcggtcatggttacatcaacccggtgtacttgatggccgactcgggtgct
cgtggtggtaccgaacagattcgtcagctggctggtatgcgtggtctgatggctaagccg
tcgggcgaaattatcgaaacgccgattaagtcgaacttccgtgaaggtctgacggtgctc
gagtacttctcctcgacgcacggtgcccgtaagggtctggccgatacggcgttgaagacg
gctgactcgggttacctgacacgtaagctggccgacgtcgcccaaaacgtagtgatcacg
gccgaagactgcggtacgacccaaggtattaccaagggtgttatttaccgcggtgaaaag
gtggaagtctcgctggcagacgcgatcaaaggccgtgtcagccgccagagcatcgtgaac
ccgatcaccgacgaggtgatcgttcgcgaaaacgagatgatcacgcctgatacggctcgc
aagatcgagaaaatgggcctggaacgtattcaggttcgtagtccaatgacctgcgacaat
ggtctgggttgctgcaaggcttgctacggcatggacatgtcgaccggcgatcaggtcgaa
gaaggcatggccgtcggtatcatcgctgctcagtcgattggtgaacctggcacgcagctt
acgatgcgtaccttccacatcggtggtgtggccgttaccgataccgaagagcacgaaaag
aaaaccaagcgtggtggtttcgtcaagtttacccgtatgcgtacggcgacaaacgacgaa
ggcaaggacatcgtgctcacccgtaacggtgaaatcacgatcgtcgatgccaagggtcgt
gaaatcgaaagctacgacgtaccgaccggtgctaccctggaagtcaaggaaaacagcgaa
gtgaagaccggtcaggttctttgctcgtggaatccttactcgattccgatcgttgccgaa
gtcggcggtcgcgtccgttacgaggacgtcgtcgaaggcgaaacgatgatcatcgagcac
gactccaccgggacgactcgtcgcatgattaccgagcacaagggcgacttccatccgcag
ctggtgattgaagacgaagacggtaagccgctcgacgtttactacctgccggaaaaggcg
atcatcgatgccgaagaaggtgccaaggtttcggccggtaccacggttgccagtacgcct
cgtgaatcgggcggtgttaaggacattactggtggtctgccgcgtgttaccgagatcttc
gaggctcgaaagcctaaggatccagcggtgatggcagaaatcgacggtgtcgtcgaaatc
ctttccgagaagaagcgtggcaagcgtacgatcatcgtccgcagcgagtcaggcatcgaa
cgcgagcatttggttcctcacggtaagcgattcctggtccacaccggtgactatgtcaaa
gcgggtcagtcgctgatcgacggaccgctcgttcctcacgacatcctgcgaatttccggc
gaggaagccgttcagcagtacctgctgcacgaaatccaaggcgtctatcgcagccagcgt
gtggaaatcaacgacaagcacatcgaaatcatcgtcgcacgcatgctgcgtaaggtgatg
gtcgactcggctggcgacaccagtttgctgcctggcttggtgatggacaagttcgacttc
cgtcgagccaacgatcagctttctcgctgcctgaagatcagcggtaccggtgactcgcag
cagttcaccgaagggatgatcgtgccgaaggaagcgttagaacaggaaaacggtcagatc
gaatcgctcggtggcaatcccgccaagggaaccaagcctgccgcggcgagtgcatcgacc
cagctcttggggatcaccaaggctgccgttcagagttccagctttatctcggcggcgtcc
ttccaggaaacgaccaaggttctcaccgaggccgccctggcaggcaaggtcgacgaactg
atcggcctgaaggagaacgtgatcttgggtcacttgattccggccggtaccggtttccgc
accttccaggattcggaagtccgcatcaatccagaagcgttggccgaactggcatcgcga
actcgcgaacgcacgctggaagagagcttcccgcttctgcaagatggcggcgagcaaccg
cagccaggtcagggacctgccgcgatctccgagatggctccggctcctggtttggaaagc
ctgctgggtggtggcggaccgattcctgctaccgaaggcccgacctacggcgagcagcca
ccgcaactgcctccgatgccgccacaagatggtggtgaaggctttgacccgaatcgggac
gaactgtaa
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integrated database retrieval system
