Brevundimonas sp. NIBR11: KKHFBJBL_00718
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Entry
KKHFBJBL_00718 CDS
T10976
Symbol
mfd_1
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bren Brevundimonas sp. NIBR11
Pathway
bren03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bren00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KKHFBJBL_00718 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bren03400
]
KKHFBJBL_00718 (mfd_1)
Enzymes [BR:
bren01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KKHFBJBL_00718 (mfd_1)
DNA repair and recombination proteins [BR:
bren03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KKHFBJBL_00718 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SecA_DEAD
AAA_30
SGNH
AAA_25
Cas3-like_C_2
RecG_dom3_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WGM30494
LinkDB
All DBs
Position
complement(752028..755336)
Genome browser
AA seq
1102 aa
AA seq
DB search
MARKPTPTITGELSLVEGPIPADSSPPRKAPPAGIAARLIARRLKKGETVLFVAASERRA
DEIAAALGALRDVNGPEVLVMPPWDCLPYDRAAPSRESMGRRMAVLEALSRPASAAGRWV
ITCPDAAIQRVPPRDVVGAGFGVSVGQALDRAALDAFATTWGYVTDDRIDEPGEIAIMGE
VVDVYPPAASGPFRIILGEDDEVTSIKTFDAVTQRSGEEVATLRLGPATERAASEGDASD
ATGAEHRLAERYEALASLFDYLPAAAILQDAEVPQRARKLTRQIQEAFEARKTFGDVDGW
RPSRPEALYLSQDEWTGRLTEARTVDTTDLSPTPRFARESAPGRALKTFIATERQAGRRV
VLTGQPHEQRVVARMLKRGGVEPARSLAAWRDVRDAETGDLATFTADLDAGFTDGIADVT
VITPSDVTGGRIARSTSASANPFGETELRVGDVVIHEEHGLGVLQALESIEADGVARDVL
RLEYHGGATVLAPVEEFARIWRYGSEAGAVTLDRLNTSGWIKRRAEVSAQIDATAAAMVE
QARARAAVTTPAISPPRAAYERFAAGFPFPESIDQGAAIDAVMADLGSGAPMNRLVCGDV
GFGKTEVALRAAAAVALAGRQVMIVAPTTVLARQHFELFQRRFAEAGIEVGHLSRITDTA
EAKRVKACLADGSLLVVVGTQALASTSVSFADLALVVIDEEHRFGARMKADLADRAPHVL
SLSATPIPRTLQSAMVGIQDVSVIASPPARRRPIRTFLTDFDPGSVRIALMREASRGGQS
FVVAPRIEDLVSLQVKLAKLVPELKVVIAHGELASDDMDAVMTGFAAGDGDILLATNIIE
NGLDVPRANTMLVWRPDRFGLAQLHQLRGRVGRGRRQGYAYLLSDPDAPLSENTLSRLHT
LEALDRLGSGFAISARDLDLRGGGDLVGEEQAGHIRLIGASLYQRVLARALKVARGEDAG
DPVPPKFALATGGSLPSEYVPDAATRINLYARLARLVTLEDIDAFSEEVEDRFGPLPEDA
ATLMSSARMTALALAAGVTEVTSGPKATAFSVTPAAAKALGEAAAASPDRRWSNDRLIVE
ANDSEPHDQAFIEAILVELAAA
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaagccgaccccgacgatcactggagagctgtctctcgttgaaggcccgata
ccggcggactcgtcacccccgcgaaaggcgcctccggccggtatcgccgcgcgtctgatc
gcccgccgcctcaagaagggcgagacggttctcttcgtcgccgctagcgagcgacgcgcc
gacgagatcgcggccgccctcggcgccctccgcgatgtcaacggtccggaggtgttggtc
atgccaccctgggactgtttgccctatgaccgcgccgcgccctcacgcgagagcatgggg
cgacggatggccgttctggaagccttgtcgaggccggcgtccgccgccggccgatgggtg
atcacttgccccgacgcggcgatccagcgcgtacctcccagggatgtcgtgggcgccggc
tttggcgtctccgtcggtcaggctctcgaccgcgcagccctcgacgcctttgcgacgaca
tggggctacgtcaccgatgaccggatcgacgagcctggtgagatcgccatcatgggcgaa
gtcgtcgacgtctatccgccggccgcgtccggcccgttccggatcatcctgggcgaggac
gatgaggtcacctcgatcaagacgttcgacgccgtcacccagagaagcggcgaggaggtc
gcgaccttgcgtctcgggccggcgaccgaacgcgcggcctcggaaggcgacgcttccgac
gcaaccggcgccgagcatcggctggccgaacggtacgaagccctggccagcctgttcgac
taccttcccgcggccgccattctgcaggacgccgaggttccgcagagagcccgcaaactc
acccgccagatccaggaggcgttcgaggcccgcaagacgttcggcgatgtcgacggctgg
cgcccatctcgtcccgaggcgctctatctttcacaggacgagtggaccggccgcctgacc
gaagcgcggaccgtggatacgacggacctctcgccgacgccgaggtttgcgcgtgagagc
gcgccgggccgcgcactcaagaccttcatcgcaaccgaacgtcaggccggccgacgggtg
gttctcaccggtcagccccacgagcagcgggtcgtcgcccgcatgttgaaacgcgggggc
gtcgagccggcgcgatcgctcgcggcctggcgcgacgtgcgagacgccgagacgggcgat
cttgcgaccttcaccgccgacctcgacgccggcttcaccgacgggatagcggacgtcacg
gtgatcacaccctccgatgtgactggcggacggatcgcccggagcacgtccgcctccgcc
aatccgtttggcgagacagaactgcgggtcggcgacgtcgtcatccatgaggaacacggc
ctgggggtgctccaggcgctggagtcgatcgaggccgacggcgtggcgcgcgatgtgctt
cgacttgaataccatggcggcgccaccgtcctggcgccggtcgaggagttcgcccgcatt
tggcgatacggatctgaagccggcgccgtgaccctcgatcgcctgaacacctcgggttgg
atcaagcgacgcgccgaagtcagcgcgcagatcgacgccacggccgccgccatggtcgaa
caggcgcgggcccgcgccgccgtcaccaccccggccataagtcctccccgcgccgcctac
gagcggttcgccgccggctttcccttcccggaatccatcgaccagggcgcagcgatcgac
gctgtcatggccgaccttggctccggtgctccgatgaaccggctggtgtgcggcgacgtg
ggcttcggcaagaccgaggtggccctgcgcgctgcggcggccgtcgcgctggcgggccgt
caggtgatgatcgtcgcgcccacaacggtcctggcgcggcagcatttcgagctgttccag
cgaaggttcgcagaggccggcatcgaggttggtcatctatctcgcatcacggacacggct
gaggccaagcgggtcaaggcctgtctggccgatgggtcgctcttggtcgttgtcggcacc
caggccctggcttcaaccagcgtgtccttcgcagaccttgccctggtcgtgatcgacgag
gagcaccggttcggcgccaggatgaaagctgacctggccgaccgcgccccgcatgtcctc
agcctctcggcgacgcccatcccccgcacgctgcagagcgccatggtcgggatccaggac
gtcagcgtcatcgccagcccgcccgcgcggcggcgaccgatccgcactttcctgaccgac
ttcgatcccggctccgtccggatcgccctgatgcgcgaggcgtcgcggggtgggcaaagc
ttcgtcgtcgcgccgcgtatcgaggacctggtatcgcttcaggtgaagctcgccaaactc
gtccccgagctgaaggtggtcatcgcccacggcgaactggcgtccgacgacatggacgcg
gtgatgaccggcttcgcggccggcgacggcgacatcctgctggccacaaacatcatcgag
aacggtctggacgtgccccgcgccaacaccatgctggtctggcgaccggaccggttcgga
ctggcccagctccaccagctgcgcggtcgtgtcgggcgcggacgtcgtcagggctacgcc
tatctgctcagcgaccccgacgccccgctctcggagaacacgctctcgcgactgcatacg
ctggaggccctggaccgcctcggctccggcttcgccatcagtgcgcgcgatctcgatctt
cgcggtggcggagatctggtgggcgaggaacaggcgggtcacatccgcctgatcggggcc
agcctgtatcagcgcgttctagcgcgggcgctgaaggtggcgcgcggcgaggacgccggc
gatcccgtacctccgaagttcgccctggcgaccggcggcagcctgccctcggagtatgtc
ccggacgccgccacgcggatcaatctgtacgctcgtctggcgcgcctcgtgactcttgaa
gacatcgatgcctttagcgaagaggtcgaggatcggttcggtcctcttccagaggacgct
gccaccctgatgtcgagcgcccggatgactgccctggccctcgccgccggtgttacggaa
gtcacctccgggcccaaggcgaccgcattctcggtcacccctgcggcggccaaggcgctt
ggcgaagccgccgcagcctcgccggatcgacgctggtctaacgatcggctgatcgtcgaa
gccaatgactccgaaccccacgaccaggccttcatcgaagcgatcctcgtggagctggca
gcggcctga
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