Brevundimonas sp. NIBR11: KKHFBJBL_00892
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Entry
KKHFBJBL_00892 CDS
T10976
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bren Brevundimonas sp. NIBR11
Pathway
bren03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bren00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKHFBJBL_00892 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bren03019
]
KKHFBJBL_00892 (rnr)
03016 Transfer RNA biogenesis [BR:
bren03016
]
KKHFBJBL_00892 (rnr)
Enzymes [BR:
bren01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KKHFBJBL_00892 (rnr)
Messenger RNA biogenesis [BR:
bren03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KKHFBJBL_00892 (rnr)
Transfer RNA biogenesis [BR:
bren03016
]
Prokaryotic type
tRNA degradation factors
KKHFBJBL_00892 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FeoC
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
WGM30662
LinkDB
All DBs
Position
complement(942200..944524)
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AA seq
774 aa
AA seq
DB search
MTNQPKKPAAGLPDEATLLAFLREAGSAEKGDIARHFGLKGEDRRRLREMIRGLEASGKL
GKRGRKGFTEAGALPPVGVADVVERDNDGDLYVRLVEASADAPRALLVPDKTKTAPGLGA
RVLAKFEHGPNGWEARLIKVLDTGTNRVLGVIRKSNKETRVEPVDRRSKDVLIVPAVQAA
DLRDGDLVLASIEKGDHRYGPKRGKILETIGKEDDPRAASLIAIHTHNVPMGFSEAVEQE
AENQDLPTLKGRDDLRDIPFITIDPADARDHDDAVYAQRDDDPKNEGGWIVWVAIADVAA
YVRPGTALDREARAKGNSTYFPDRVEPMLPERLSNGLCSLKEGENRATLAVRMVFDKDGR
KTGHRFHRGLMRSHAKLSYEQAQAAIDGPDKGGGTDDATGPIMDTILYPLWNAYHTMLKG
RLKRAPLQIDSAERRIRMSPDGGIASIEKRVSLEAHRLIEEMMVQANVCAAETLEQKKTP
LIFRVHEAPSQEKVFNLADFLSTIGKPWNKGEAPTTKRFNKLLDETRDGPHAEVVNEVVL
RSQMQAIYSPENLGHFGLNLDRYAHFTSPIRRYSDLIVHRGLIRALNLGKDGLTDREIAE
LPAIADQVTQTERRSMAAERDAMDRYIAAILSDRVGATFTGRITGVTRFGLFVRLEETGA
DGLVPVGSLGNEYFTHDDRAHALVGERSGQRYTLGRMVEVKLKEATPITGGLLFEMLSDP
ESRDPNAPAPRLGMRGRGGDGPPSRGKNRPGGPKPRNGSKPSGGLKGVRKGKRR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaccaacccaagaaacccgcggccggactgccggatgaagccactttgctggcc
ttcctgcgcgaagccggctcggcggaaaagggcgacatcgcccgacacttcggcctcaag
ggcgaagaccgcagacgcctgcgcgaaatgatccggggcctcgaggcctccggcaagctc
ggcaagcgcggccgcaagggcttcaccgaagccggcgccctgccccccgtcggcgtcgcc
gacgtggtcgagcgcgacaacgacggcgacctctacgtccgcctggtcgaggcctcggcc
gacgccccgcgcgccctcctcgtccccgacaagaccaagaccgctcccggcctcggcgcc
cgcgtcctcgccaagttcgagcatggcccgaacggctgggaagcgcgcctcatcaaggtg
ctcgataccggcaccaaccgcgtcctcggtgtcatcaggaagtccaacaaggagacccgc
gtcgagcccgtcgaccgccgctccaaggacgtcctgatcgtccccgccgtccaggcggcc
gatctgcgcgacggcgacctggtgctggcatccattgaaaagggcgatcaccgctacggt
cccaagcgcggcaagatcctggagaccatcggcaaggaggacgaccctcgcgccgcctcc
ctgatcgccatccacacccacaacgtcccgatgggcttctccgaagcggtcgagcaggag
gccgagaatcaggacctgccgacgttgaagggccgcgacgacctgcgcgacattcccttc
atcaccatcgaccccgccgacgcccgcgaccacgatgacgccgtctacgctcaacgcgac
gacgatccgaagaacgagggcggctggatcgtctgggtggccatcgccgacgtcgccgcc
tacgtccggcccggcacggccctcgaccgcgaagcccgcgccaagggcaactcgacctac
ttccccgaccgcgtcgagcccatgctgcccgagcgcctctcgaacggtctgtgcagcctg
aaggaaggcgagaaccgcgcgaccctggccgtccgcatggtcttcgacaaggatggccga
aagacgggccatcgcttccaccgcggcctgatgcgcagccacgccaagctcagctacgag
caggcccaggccgcgatcgatggcccggacaaaggcggcggtaccgatgacgccaccggt
ccgatcatggacaccatcctgtatccgctgtggaacgcctaccacaccatgctgaagggc
cgcctgaagcgcgccccgttgcagatcgactcggccgaacgccgcatccgcatgtcgccc
gacggcggcatcgcctcgatcgagaaacgcgtctccctcgaagcccaccggctgatcgag
gaaatgatggtccaggccaacgtctgcgccgccgagaccctggagcagaagaagaccccg
ctcatcttccgcgtccacgaggcgccgagccaggagaaggtgttcaacctcgccgacttc
ctgtcgaccatcggcaagccgtggaacaagggcgaggccccgaccaccaagcggttcaac
aaactgctggacgagacccgcgacggcccccacgccgaggtggtcaacgaggtcgtcctg
cgcagccagatgcaggccatctattcgcccgagaacctcggccacttcggcctgaatctc
gaccgctacgcccacttcacctcgccgatccggcgctattccgacctgatcgtgcaccgg
ggcctgatccgcgccctcaacctcggcaaggacgggctgaccgaccgcgagatcgccgaa
ctgccggccatcgccgatcaggtgacccagaccgagcgccgctctatggccgccgagcgc
gacgccatggatcgctacatcgccgccatcctttcggaccgcgtcggcgcgaccttcacc
ggccgcatcaccggcgtgacccgcttcggtctgttcgtccggctggaggagacgggcgcc
gatggtctcgttcccgtgggctcgctgggcaatgagtatttcacccacgacgaccgcgcc
cacgccctcgtcggcgaacgctcgggccagcgctacaccctgggccgcatggtcgaggtc
aagctcaaggaagccacgcccatcaccggcggactcctcttcgagatgctctccgacccc
gaatcccgcgaccccaacgccccggccccgcgcctgggcatgcgcggacgcggcggcgac
ggccctccctcgcgcggcaagaatcgtcccggcggtccgaagcctcgcaacggaagcaag
ccctccggcggcctcaagggcgtccggaagggcaagcggcgctag
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