Brevundimonas sp. NIBR11: KKHFBJBL_01437
Help
Entry
KKHFBJBL_01437 CDS
T10976
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bren Brevundimonas sp. NIBR11
Pathway
bren03030
DNA replication
bren03430
Mismatch repair
bren03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bren00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KKHFBJBL_01437 (dnaE1)
03430 Mismatch repair
KKHFBJBL_01437 (dnaE1)
03440 Homologous recombination
KKHFBJBL_01437 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bren03032
]
KKHFBJBL_01437 (dnaE1)
03400 DNA repair and recombination proteins [BR:
bren03400
]
KKHFBJBL_01437 (dnaE1)
Enzymes [BR:
bren01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KKHFBJBL_01437 (dnaE1)
DNA replication proteins [BR:
bren03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KKHFBJBL_01437 (dnaE1)
DNA repair and recombination proteins [BR:
bren03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KKHFBJBL_01437 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
WGM31196
LinkDB
All DBs
Position
complement(1457756..1461244)
Genome browser
AA seq
1162 aa
AA seq
DB search
MSRLRPEIEDQAITDMPAETGFVHLRVRSAYSLLEGAIKAGKVGKLAADAGMPAVAVADR
VNLFGALEFSEASKSVGVQPLIACALPITGIGGRRGERWAKTPTVVLICQSEIGWRNLCA
LSSEAYLLAGDEEPNVAWSRVADLSEGLILLSGGPDGPVDPLFAQNKPGEAAEALTAMAG
VFGDRFYVELQRHGLPDEAAAERGLVEWAYANDVPLTATNDAYYAKRDQAKSHDALLCIA
DGAFTGQEDRRRITDQHYFKSALEMRTLFSDLPEACDTTIEIAKRCAFLVKTHPPILPRF
DTGDGRSEPDELMHQAREGLRARLKQVTPAAPEEDYWARLEWEVGIIQQMGFPGYFLIVS
DFIKWAKTHSIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID
FCQERREEVITYVQERYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPN
NPANPTTLAQAIEIEPRLREARDAEKSVANLLATALELEGLYRNASTHAAGIVIGDRPLV
ELTPLYQDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVLDRAHGYLSRRGAALDFNL
LPLDDKATYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDT
YIDRKFGRAEVDYLHPSLTEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKK
KKEEMDIQKARFIKGASEKSVPEQQSDGIFELVAKFAGYGFNKSHAAAYALISYQTGWLK
ANHPVEFFAASMSLDLSNTDKLAVFYQDARKFGIPVRAPDVNESSADFDVRWEDGKGAVL
YALGAIRNVGLEAMKHVVEVRETGGRFADIFDFLERVDPRAVNKRALEGLAKAGAFDSIH
PNRRQLFEQADVLMAYCQSVAADRNSSQVSLFGADQAGASRPRLKSMEPWIGPERLDQEL
SAVGFYLSGHPLEDMEGALRRKRVTFVAEAVQRAEQGHDAFMMAGVVRRRQERASAKSGE
KFAFVTFSDPTGEFECLFPPEQLRASREMLEVGAHLMVRVRAKSSDGEVRFFGDGVSKLD
AIVDDASVGLRVHVSARSTDAAALQARLERAKAQGKGGEITLIASLDGRREVEVRLPGRY
RLDGALRGALKTAPGVLMLEDA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcctccggcctgagatcgaggatcaggccatcaccgacatgcccgcagagacc
ggtttcgtccatctgagggtgcgctcggcctattcgctgctggaaggcgcgatcaaggcg
ggcaaggtcgggaagctggccgccgatgcggggatgccggccgtcgccgtggccgaccgg
gtcaatctgttcggggcgctggagttctcggaggcctccaagagcgtcggcgtgcagccg
ttgatcgcctgtgcgctgccgatcacgggtatcggcggcaggcggggcgagcgctgggcc
aagacgccgaccgtcgtcctgatctgccagagcgagatcggctggcgaaacctctgcgcc
ctgtcgtccgaagcctatctgctggccggggacgaggaacccaacgtcgcctggagccgg
gtcgcggacctgtccgaggggctgatcctgctgtccggcggcccggacggtccggtcgac
ccgctgttcgcccagaacaagcccggtgaggccgccgaggcgctgacggccatggccggg
gtgttcggcgaccgcttctatgtcgagctgcaacgccacggtctgccggatgaggcggcg
gccgagcgcggtctggtcgaatgggcgtatgcgaacgacgtccccctgaccgcgaccaac
gacgcgtattacgccaagcgcgatcaggccaagtcgcacgacgccctgctgtgcatcgcc
gacggcgccttcaccggccaggaagatcggcgccgcatcaccgaccagcactacttcaag
tccgcgctcgagatgcggaccctgttctccgacctgcccgaggcctgcgacacgaccatc
gagatcgccaaacgctgcgccttcctggtcaagacccacccgccgatcctgccgcgcttc
gacaccggtgacggccgttccgagcctgacgaactgatgcaccaggcccgcgagggtctg
agggcgcggctgaaacaggtgacgcccgccgcgcccgaggaagactactgggcgcgtctg
gagtgggaggtcgggatcatccagcagatgggcttccccggctatttcctcatcgtgtcg
gacttcatcaaatgggcgaagacccattcgattccggtggggccggggcgggggtcgggc
gcaggttcgctggtggcctgggccctgaccatcaccgatctggaccccttgcggttcggc
ttgctgttcgagcggttcctgaaccccgaacgggtctccatgcccgacttcgacatcgac
ttctgtcaggagcggcgcgaggaggtcatcacctacgtccaggagcgctacggcaaggac
cgggtagctcagatcatcaccttcggcacgctgcaggcgcgggccgtgctccgcgacgtc
ggtcgggtgctgcagatgccgctggggcaggtcgaccggctctgcaagatggtgccgaac
aatccggccaatccgacgacgctggcccaggccatcgagatcgagccacgcctgagagag
gcgcgcgacgccgagaagtcggtggcgaacctgctggccacggcgctggagctagaaggc
ctctatcgcaacgcatcgacccacgccgccggcatcgtcatcggcgaccggcccctggtc
gagctgacgccgctgtatcaggatcctcggtcggatatcccggcgacccagttcaacatg
aaatgggtcgagccggcggggctggtgaagttcgacttcctcggcctgaagaccctgacg
gtactggaccgagctcacggctatttgtcgcgacgcggggcggcgctggacttcaacctt
ctgccgctcgacgacaaggcgacctacgaactgatggcgtccggccagacggtcggggtg
ttccagctggaatcgcagggcatgcgcgacaccctgcgcaagatgcgctgcggctccatc
gaggagatcaccgccctgatctccctctatcggcccgggccgatggagatgatcgacacc
tatatcgaccggaaattcggccgggccgaggtggactatctgcacccctcgctgaccgag
gtcctgaccgagacctacggggtcatcatctaccaggaacaggtgatgaagatcgcccag
atcctggccggctattcgctgggcgaggccgacctacttcgacgcgcgatgggcaagaag
aagaaggaggagatggacatccagaaggcgcgcttcatcaagggcgcctcggagaagtcc
gtgccggagcagcagtcggacggcatcttcgaactggtggccaagttcgcgggctacggc
ttcaacaagtcgcacgccgccgcctatgcgctgatttcctaccagaccggctggctgaag
gcgaaccatccggtcgagttcttcgccgcttcgatgtcgctggatctgtcgaacaccgac
aagctggcggtcttctatcaggacgcccggaagttcgggattccggttcgggccccggac
gtgaacgagagctccgccgacttcgacgtgcgctgggaggacggcaagggggcggtcctc
tatgcgctcggggccatccgcaatgtgggcttggaagcgatgaagcacgtcgtcgaggtg
cgcgagacgggcggtcggttcgccgacatcttcgacttcctggagcgggtcgatccgcgc
gcggtcaacaagcgggcgcttgagggtctggccaaggccggcgccttcgacagcatccac
ccgaaccggcggcaactgttcgaacaggccgacgtcctgatggcctattgccagagcgtg
gcggcggaccggaactcgtcgcaggtctccctgttcggcgccgatcaggccggggcctcg
cggccgcgcctgaagagcatggagccctggatcggaccggaacggctggaccaggaactg
tcggcggtcggcttctacctgtccggccaccctctggaggacatggaaggggcgctgcga
aggaagcgcgtgaccttcgtcgcagaggccgtgcagcgggcggaacagggccacgacgcc
ttcatgatggccggcgtcgtgcgccgtcgtcaggagcgggccagcgccaagtcgggcgag
aaattcgccttcgtcaccttctcggacccgacgggagagttcgaatgcctattcccgccg
gagcaactgagagcgtcacgcgagatgctggaggtcggcgcccatctgatggtgagggtt
cgagccaagtcttcggacggggaggtgcggttcttcggcgacggggtctcgaaactggac
gccatcgtcgacgacgcgtcggtcgggctgcgagtccatgtttcggcgcgatcgaccgat
gcggcggctctccaggcgcggctggagcgggcgaaggcgcagggcaagggcggtgagatc
accctgatcgcctctctggacggccggcgcgaggtcgaggtgcggctgcccggccgctat
cgactggacggagcgctgagaggggccttgaagaccgcgcccggcgtgttgatgctggaa
gacgcctga
DBGET
integrated database retrieval system
