Brevundimonas sp. NIBR11: KKHFBJBL_02260
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Entry
KKHFBJBL_02260 CDS
T10976
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bren Brevundimonas sp. NIBR11
Pathway
bren03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bren00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKHFBJBL_02260 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bren03019
]
KKHFBJBL_02260 (rhlE_2)
Enzymes [BR:
bren01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KKHFBJBL_02260 (rhlE_2)
Messenger RNA biogenesis [BR:
bren03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KKHFBJBL_02260 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Helicase_RecD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WGM32009
LinkDB
All DBs
Position
2264536..2266074
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AA seq
512 aa
AA seq
DB search
MSTTFESFGLNKALLQALTTEGYITPTPIQTQAIPSVMSGKDLLGIAQTGTGKTAAFALP
ILHRLAENRTVALPRTTRCLVLSPTRELATQIADSFKAYGRHLGFKVAVVFGGVKYGPQE
RALQGGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVAKIPA
KRQNLFFSATMPSEIGKLAGELLKEPVKVQVTPQSTTVERINQSVIHIEQGRKRALLTEM
FADPNYTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVL
VATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGKDGSAVSFVAGDEMKLLRD
IEKVTRQKIPASDRRNDKSLGLLDQSIMASGVASKASMPDDGRGDRQQKRGPRNPHRDGV
KKDHGGQPHRVRKGGAGAQRDRTHHADRGDRPLASTQPFDPLAADRARSAAAANRPVSSH
QGGEAKPDGEIRRRPRGRRPSNGGKGYAGAKG
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagcactaccttcgaatccttcggcctcaacaaggccctgctgcaggccctcacgacc
gagggctacatcaccccgacgccgatccagacccaggcaattccctcggtcatgtccggc
aaggaccttctcggcatcgcccagaccggcaccggcaagaccgcggccttcgccctgccg
atcctgcatcgcttggccgagaaccgcaccgtcgccctgccccgcacgacgcgctgcctg
gtcctgtcgcccacccgcgaactggccacccagatcgccgacagcttcaaggcctacggc
cgtcatctcggcttcaaggtcgcggtcgtcttcggcggcgtgaaatacggcccgcaggag
cgcgcgctgcagggcggcctcgacgttctggtcgccacgccgggccgcctgctggaccac
atgcagcagaagaccctggacctgtcgtcgaccgagatcttcgtcctggacgaggcggac
cagatgctggacctcggcttcgtcaagccgatccgccagatcgtcgccaagatcccggcc
aagcgccagaacctgttcttctcggccaccatgccgtcggagatcggcaagctggccggc
gagcttctgaaggagcccgtcaaggtccaggtcacgccgcagtcgaccacggtcgagcgc
atcaaccagtcggtcatccacatcgaacagggccgcaagcgcgccctgctgaccgagatg
ttcgccgatccgaactacacgcgctgcctggtcttcaccaagaccaagcacggcgccgac
aaggtcgcggcctatctggaagctggcggcgtccaagccggcgcgatccacggcaacaag
tcccagccccagcgtgagcgcaccctggccgccttcaaggccggcaagctgcgcgtcctg
gtcgccaccgacatcgccgcgcgcggcatcgacgtggatggcgtctcgcacgtcgtgaac
ttcgaactgcccttcgtgccggaagcctatgtccaccgcatcggccgtacggcccgcgca
ggcaaggacggctcggccgtgtcgttcgtggccggcgacgagatgaagctgctgcgcgac
atcgagaaggtcacgcgccagaagatcccggcctccgaccgccgcaacgacaagtcgctg
ggcctgctcgaccagtcgatcatggcctcgggcgtggcgtcgaaggcctccatgcccgac
gatggccgcggggaccgtcagcagaagcgcggcccgcgcaacccgcaccgggacggggtc
aagaaggaccacggcggccagccgcaccgcgtccgcaagggcggcgccggcgctcagcgc
gaccgtacgcatcacgccgaccgtggcgatcgtccgctggcctcgacccagcccttcgat
ccgttggcggccgatcgcgcccgttcggcagctgcagccaatcgtccggtgtcgagccat
caaggtggcgaggctaagcccgacggtgaaatccgccgtcgcccgcgcggccgccgtccc
tcgaacggcggcaagggctacgccggcgccaagggctga
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