Brevundimonas sp. 'scallop': E4341_04505
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Entry
E4341_04505 CDS
T09204
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4341_04505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bres03019
]
E4341_04505
03009 Ribosome biogenesis [BR:
bres03009
]
E4341_04505
Enzymes [BR:
bres01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4341_04505
Messenger RNA biogenesis [BR:
bres03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4341_04505
Ribosome biogenesis [BR:
bres03009
]
Prokaryotic type
rRNA helicases
E4341_04505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QIF81011
LinkDB
All DBs
Position
920865..922763
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AA seq
632 aa
AA seq
DB search
MPFPAVHPALDRALINKGYAEPTPVQAAVLEAEHADRDLLVSAQTGSGKTVAFGLAAAPT
LLGDKPIFGPGDAPLCLAIAPTRELAMQVAAELQWLYADSGAKIATCVGGMDARREARAL
GFGVHIVVGTPGRLKDHIDRGNLDLSELKVAVLDEADEMLDMGFREDLEHILDQAPAERR
TLLFSATIARDIATLAKRYQKDAVRIDATDKTRQHADIEYRAYRIAPNEIEHAVVNTLRW
FEAPRAMVFCSTRDSVRHLQSSLLERGFSTVSLSGEMGQRERTDALQSLRDGRARVCVAT
DVAARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGISVMLVPHSRRRKAERLMD
EAGVDAVWTGAPTFDEIRKADEGRLLSPEFFEADVSDEDMVVAKRMIAERTPDEIAAALV
RLLRKEQPAPEELSDPGSDRGPAKRERTVRNDDGTAAQPWPGDRLGADDVVWFRLDVGRN
KNADPKWLIPLICRIGGISKPQIGAIRTFPEETRFEVAKTHEKAFREAVAASKDEVKITP
SEAPTPGSMKASRFAGKPREDGDRPFKKTPYKRADGGEGDARPPFKKKPWAPKADGGANP
RSNASGDKPYAKKPFKAKPGFKKDGFKGKPKG
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgccctttcccgccgtccatcccgcgctcgaccgcgccctgatcaacaagggctatgct
gaacccactccggttcaggccgccgtcctggaggcggagcatgcggatcgcgacctgctg
gtctcggcccagacgggttcgggcaagaccgtcgcctttggtctggccgctgcgccgacc
ctgctgggcgacaagccgatcttcggccccggcgacgcgccgctctgcctggccatcgcg
cccacgcgggaattggccatgcaggtcgcggccgagctgcaatggctgtacgccgactcc
ggcgccaagatcgccacctgcgtcggcggcatggatgcgcggcgtgaagctcgcgcgctc
ggctttggcgtccatatcgtcgtcggcacgccgggccgcctgaaggatcacatcgaccgg
ggcaacctagacctgtcggagctgaaggtcgccgtcctcgacgaagccgacgagatgctg
gacatgggcttccgcgaggacctggagcacatcctggaccaggcgccggccgaacgccgc
accctgctgttctcggcgaccatcgcgcgcgacatcgccaccttggccaaacgctatcag
aaggacgcggtccgcatcgacgcgaccgacaagacgcgccagcacgccgacatcgaatac
cgcgcctatcgcatcgcgcccaacgagatcgagcacgcggtggtcaacaccctgcgctgg
ttcgaggcgccgcgcgccatggtcttctgctcgacccgcgacagcgtgcgtcacctgcaa
tcctctctgctggagcgcggcttctcgaccgtcagcctgtcgggtgaaatgggtcagcgc
gagcgcaccgatgcgcttcagtcgctgcgtgacggccgcgcccgcgtctgcgtcgccacc
gacgtcgccgcgcgcggtctggacctgccggacctgggtctggtgatccacgccgaactg
ccgatgaaccgcgccggcctgctgcaccgttcgggccggacgggccgggcgggcaagaag
ggcatctcggtcatgctggtcccgcactcgcgccgtcgcaaggctgagcggctgatggac
gaggccggcgtcgacgccgtctggaccggcgccccgaccttcgatgaaatccgcaaagcc
gacgaaggccgtctgctgtcgcccgagttcttcgaggctgacgtctccgacgaggacatg
gtcgtcgcaaagcggatgatcgccgagcgcacgcccgacgagatcgccgccgccctggtg
cgtctgctgcgcaaggaacagccggcgccggaagaactgtccgatccgggttcggatcgc
ggtccggccaagcgcgaacgcaccgttcgcaacgacgacggtacggcggctcaaccctgg
ccgggcgaccgcctgggcgctgatgatgtggtctggttccgtctggacgtgggccgcaac
aagaacgccgaccccaaatggctgatcccgctgatctgccgcatcggcggcatttccaag
cctcagatcggcgccatccgcaccttccccgaagagacgcggttcgaggtcgccaaaacc
cacgagaaggctttccgcgaagccgtcgccgcctccaaggacgaggtgaagatcacgccg
tcggaagccccgacgcccggctcgatgaaggccagccgcttcgccggcaagccgcgcgag
gatggcgaccgtcccttcaagaagaccccctacaagcgcgccgatggcggagagggcgac
gcccgcccgccgttcaagaagaagccttgggcgccgaaggctgacggcggcgccaatccg
cgctcgaacgcctcgggcgacaagccctatgccaagaagcccttcaaggccaaaccgggc
ttcaagaaggacggcttcaaaggcaagcccaagggctga
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